Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J10
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr 3|||M...    93   2e-20
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    28   0.87 
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   1.5  
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    27   2.0  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    27   2.0  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   2.7  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   3.5  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   8.1  

>SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 124

 Score = 93.1 bits (221), Expect = 2e-20
 Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
 Frame = +3

Query: 24  PVLSTHVLDISTGIPAVGLFVELYKKKDT---SWTLWHNTVTSGDGRI-QFPFSKDSMAE 191
           P L+ H+L+  +GIPA G+ V L+K  ++   S      T T+ +GR+  +     ++  
Sbjct: 11  PALTAHILNTMSGIPAAGVQVALFKLNESPTPSQQFIATTETNANGRVTSWNVDLSTVES 70

Query: 192 GVYKLKFNVSDYYKKTNTETLYPFVEITFHTKEGAHYHIPLLLSPYGYSTYRGS 353
           G+Y  +F    Y+      + YP+VE+     +G HYHIPLLL+PYGY+TYRGS
Sbjct: 71  GIYTFRFETGAYFDSLGVTSFYPYVEMAVRINKGQHYHIPLLLAPYGYTTYRGS 124


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 315 LLSPYGYSTYRGS*IYTNK*NW 380
           L S YGY T+R S +YT+  NW
Sbjct: 522 LKSAYGYLTHRLSALYTSSENW 543


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 192 GVYKLKFNVSDYYKKTNTETLYPFVEITFHT 284
           G+YKL  N SD Y +T++E  +  ++   +T
Sbjct: 725 GLYKLSDNASDLYTQTSSEGRWSAIDANGYT 755


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 181 ESLEKGNCILPSPDVTVLCHRVHEVS--FFL*SSTNNPTAGI 62
           E  E  NCI P PD   L +R+HEVS  FF     + P + I
Sbjct: 153 EKKELINCI-PIPDDEKLTNRLHEVSEAFFALDEQHTPRSKI 193


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 160 CILPSPDVTVLCHRVHEVSFFL*SSTNNPTAG 65
           C+   PD +++CH + E    L S  +NP  G
Sbjct: 129 CMSEHPDKSLICHPLAEKFAILASKLHNPKVG 160


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 243 TETLYPFVEITFHTKEGAHYHIPLLLSPYGY 335
           T TL P +          HY +P LL+P GY
Sbjct: 502 TATLLPEITFVPSITVTTHYVLPTLLAPLGY 532


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 237 TNTETLYPFVEITFHTKE 290
           +N+ETL P+VEI  H+ E
Sbjct: 787 SNSETLSPYVEIQVHSME 804


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 242 ISFLIIITDIEL*FVNSFSHRVLRKRELYSTIARRHGVV 126
           + FL    D+ +  V     R+L KRE+++ + + HG +
Sbjct: 811 LEFLATTFDLPVQRVTVIVSRLLSKREIHAALDQVHGAI 849


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,376
Number of Sequences: 5004
Number of extensions: 47041
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)