Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J10
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0213 + 15481691-15481837,15482759-15482860,15483169-154833...    79   3e-15
06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,758...    28   3.5  
08_01_0275 + 2249794-2251338                                           27   8.1  

>03_03_0213 +
           15481691-15481837,15482759-15482860,15483169-15483328,
           15484140-15484603
          Length = 290

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 16/130 (12%)
 Frame = +3

Query: 12  NMSRPVLSTHVLDISTGIPAVGLFVELYKKKDTS------------WTLWHNTVTSGDGR 155
           N +RP ++THVLD++ G PA G+ V L   KD S            W    ++VT+ DGR
Sbjct: 165 NRTRPPITTHVLDVARGSPASGIEVHLEMWKDASTPPSFNNKDFNGWATLGSSVTNNDGR 224

Query: 156 I-QFPFSKDSMAEGVYKLKFNVSDYYKKTNTETLYPFVEITFHTKEG---AHYHIPLLLS 323
             Q     +++A G Y++ FN S Y         +P+V I F  K+     H+H+PLL S
Sbjct: 225 SGQLMDIVNNVAPGFYRISFNTSKY----APSGFFPYVSIIFEIKKNQTTEHFHVPLLHS 280

Query: 324 PYGYSTYRGS 353
           P+ ++TYRGS
Sbjct: 281 PFSFTTYRGS 290


>06_01_0977 +
           7585817-7585970,7586057-7586146,7586500-7586702,
           7587274-7587452,7587913-7587991,7588403-7588537,
           7588651-7588800,7588887-7588997,7589084-7590004,
           7590351-7590623,7590853-7591062,7591425-7591573,
           7591716-7592052
          Length = 996

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 60  GIPAVGLFVELYKKKDTSWTLWHNTVTSGDGRIQ 161
           G+P   L++ +++  D ++++WHN V     RI+
Sbjct: 211 GLPPERLWISVFQDDDEAFSIWHNEVGVPKERIK 244


>08_01_0275 + 2249794-2251338
          Length = 514

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 105 DTSWTLWHNTVTSGDGRIQFPFSKDSMAEGVYKLKFNVSDYYKKTNTETLYPFVE 269
           DT+ T + +   +G+G    P + D +   ++K    +SDYYK   +  + P V+
Sbjct: 5   DTNPTAF-SAFPAGEGETFQPLNADDVRSYLHKAVDFISDYYKSVESMPVLPNVK 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,224,048
Number of Sequences: 37544
Number of extensions: 268095
Number of successful extensions: 579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)