Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J10
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34114| Best HMM Match : Transthyretin (HMM E-Value=1.1e-13)         58   5e-09
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_30137| Best HMM Match : Phosphodiest (HMM E-Value=0)                29   2.7  
SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)                   28   3.6  
SB_56170| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              27   6.3  
SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_34114| Best HMM Match : Transthyretin (HMM E-Value=1.1e-13)
          Length = 626

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
 Frame = +3

Query: 15  MSRPVLSTHVLDISTGIPAVGLFVELYKKKDT---SWTLWHNTVTSGDGRIQFPFSKDSM 185
           M++  L+TH LD + G PA  L V+++ ++     SWTL  ++ T+GDGR+      D  
Sbjct: 463 MAKSPLTTHALDTARGTPARQLPVKVFIEQPNNTESWTLLASSSTNGDGRVPNLLKPDQF 522

Query: 186 AEGVYKLKFNVSDYYKK-TNTETLYPFVEI 272
               YK++F    Y+K    TE  YP VE+
Sbjct: 523 IPARYKIRFETEIYFKSLAITEYFYPHVEV 552


>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1486

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 229 IRKLIRRHCTLLWKSPFTQRKEHITTYL 312
           +R+ +R HCT  W  PF+ R + +  ++
Sbjct: 276 LREYMRVHCTFDWSDPFSNRVDKVLEWV 303


>SB_30137| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 655

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 229 IRKLIRRHCTLLWKSPFTQRKEHITTYL 312
           +R+ +R HCT  W  PF+ R + +  ++
Sbjct: 178 LREYMRVHCTFDWSDPFSNRVDKVLEWV 205


>SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)
          Length = 539

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 413 VKTKLTLQTDTPILFISINSAPSIRGISIG 324
           +KTK    T   ILF+S+  AP+I  +++G
Sbjct: 167 IKTKYDNATVNVILFVSVGKAPAIDVVAVG 196


>SB_56170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 190 KEFTN*SSMSVIIIRKLIRRHCTLLWKSPFTQRKEH 297
           K  T  +  SV I+R  +RR C ++WK    + + H
Sbjct: 81  KTTTETTLRSVAIVRSNLRRSCAIIWKPLCDRLRSH 116


>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 1269

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 147  DGRIQFPFSKDSMAEGVYK----LKFNVSDYYKKTNTETLY 257
            D R+  PF+KDS+   V K      FN++  Y   N +++Y
Sbjct: 892  DNRVHNPFNKDSVYNPVNKDIVYNPFNINSVYNPFNKDSVY 932


>SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 106 ILHGPCGTTP*RLAMVEYNSLF-LRTRWLKEFTN*SSMSVIIIRKLIRRHCTLLWK 270
           I++ PC T   +L++     ++ L  R        +  S  II KL+ R CT++WK
Sbjct: 314 IVNSPCDTIIWKLSLRSCTIIWKLPVRSCTIIWKLTLRSCAIIWKLLLRSCTIIWK 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,839
Number of Sequences: 59808
Number of extensions: 342788
Number of successful extensions: 732
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)