Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J10
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58220.1 68418.m07289 expressed protein                             71   3e-13
At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase fami...    28   2.9  
At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protei...    27   5.1  
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains...    27   5.1  
At1g79740.1 68414.m09302 hAT dimerisation domain-containing prot...    27   5.1  
At3g03450.1 68416.m00343 gibberellin response modulator, putativ...    27   6.8  
At3g55950.1 68416.m06217 protein kinase family protein contains ...    27   9.0  
At1g70740.1 68414.m08154 protein kinase family protein contains ...    27   9.0  

>At5g58220.1 68418.m07289 expressed protein
          Length = 324

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 16/128 (12%)
 Frame = +3

Query: 18  SRPVLSTHVLDISTGIPAVGLFVELYKKKDTS-----------WTLWHNTVTSGDGRIQF 164
           SRP ++THVLD+S G PA G+ V L     T+           W+    + T  DGR   
Sbjct: 202 SRPPITTHVLDVSRGAPAAGVEVHLEVWSGTTGPSFVHGGGGVWSSVGTSATDRDGR-SG 260

Query: 165 PFSK--DSMAEGVYKLKFNVSDYYKKTNTETLYPFVEITFHTKEGA---HYHIPLLLSPY 329
           P     D++  G Y++ F+ + Y    +    +P+V I F   E     H+H+PLLL+P+
Sbjct: 261 PLMDLVDALNPGTYRISFDTAKY----SPGCFFPYVSIVFQVTESQKWEHFHVPLLLAPF 316

Query: 330 GYSTYRGS 353
            +STYRGS
Sbjct: 317 SFSTYRGS 324


>At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase family
           protein similar to PABA synthase from Streptomyces
           griseus [SP|P32483], Streptomyces pristinaespiralis
           [gi:1575336]; contains Pfam profiles  PF00425:
           chorismate binding enzyme, PF00117: glutamine
           amidotransferase class-I, PF04715: Anthranilate synthase
           component I, N terminal region
          Length = 919

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 78  LFVELYKKKDTSWTLWHNTVTSGDGRIQFPFSKDSMAEGVYKLKFNVSDYYKKTNTETLY 257
           +F+EL+ K   + T W +T +S   R +F F          +L F++SD  + T+    +
Sbjct: 436 IFMELFGKNRGNDTFWLDTSSSDKARGRFSFMGGKGGSLWKQLTFSLSDQSEVTSKHAGH 495

Query: 258 PFVE 269
             +E
Sbjct: 496 LLIE 499


>At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protein
           contains Pfam profiles: PF01411 tRNA synthetases class
           II (A), PF02272 DHHA1 domain
          Length = 978

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 51  ISTGIPAVGLFVELYKKKDTSWTLWHNTVTSGDGRIQ 161
           I  G+PA  ++V +Y+  D ++ +W N V     RI+
Sbjct: 187 IEFGLPANRVWVSIYEDDDEAFEIWKNEVGVSVERIK 223


>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 500

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 255 YPFVEITFHTKEGAHY 302
           YP+++ITFH   G H+
Sbjct: 48  YPYIQITFHEYSGEHF 63


>At1g79740.1 68414.m09302 hAT dimerisation domain-containing protein
           contains Pfam profiles: PF04937 domain of unknown
           function (DUF659), PF05699 hAT family dimerisation
           domain
          Length = 518

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 9   VNMSRPVLSTHVLDISTGIPAVGLFVELYKKKDTS 113
           V +S P+L   + ++STG PAVG   EL  K   S
Sbjct: 249 VAISEPILKV-LREVSTGKPAVGSIYELMSKAKES 282


>At3g03450.1 68416.m00343 gibberellin response modulator, putative /
           gibberellin-responsive modulator, putative similar to
           GAI (GI:2569938), RGA1 (GB:AAC67333) and  RGA2
           (GI:2339980) [Arabidopsis thaliana]; possible
           involvement in nitrogen metabolism
          Length = 547

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
 Frame = -3

Query: 181 ESLEKGNCILPSPDV--TVLCHRVH----EVSFF---L*SSTNNPTAGIPVDISRTCVDR 29
           + LE+   +L + DV  TVL   VH    ++S +   + S  NNP A   +D +R+CVDR
Sbjct: 64  QKLEQLEMVLSNDDVGSTVLNDSVHYNPSDLSNWVESMLSELNNP-ASSDLDTTRSCVDR 122

Query: 28  TGLDMFTI 5
           +  D+  I
Sbjct: 123 SEYDLRAI 130


>At3g55950.1 68416.m06217 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           cytokinin-regulated kinase 1 [Nicotiana tabacum]
           gi|10998537|gb|AAG25966
          Length = 814

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -3

Query: 484 TLNKLTDKNGIFGIGIV 434
           +LN LTDK+ ++G+G+V
Sbjct: 685 SLNVLTDKSDVYGLGVV 701


>At1g70740.1 68414.m08154 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 425

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 302 VMCSFLCVKGDFHKRVQCLRISFLI 228
           V    LCV+GD H+R    R+S L+
Sbjct: 308 VQIGLLCVQGDPHQRPSMRRVSLLL 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,997,455
Number of Sequences: 28952
Number of extensions: 231433
Number of successful extensions: 502
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)