Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J09
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   0.77 
SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   1.8  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    23   4.1  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    22   9.5  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    22   9.5  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 142 VEYMCLLILFDQNSNVYVY*NTHRV 68
           V+Y+ L I++    NVY + NTH V
Sbjct: 694 VQYIFLSIMYTNVLNVYAFCNTHDV 718


>SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 14  YELKVSKYNSKFPYLPSDNAMCVLVYVH 97
           ++LK SK  ++FPY P ++ +  +   H
Sbjct: 26  WDLKASKSLARFPYTPLESLLAPISAFH 53


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 23  KVSKYNSKFPYLPSDNAMC 79
           +V+ Y S  P   +DNAMC
Sbjct: 60  RVNLYRSSCPLWENDNAMC 78


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 101 KCVRILKHTSRYHSAN 54
           +CV IL  T RY  AN
Sbjct: 740 ECVNILTSTQRYPEAN 755


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 101 KCVRILKHTSRYHSAN 54
           +C+ ILK T +Y S N
Sbjct: 214 ECIHILKLTEKYSSQN 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,809
Number of Sequences: 5004
Number of extensions: 8061
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)