Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J09
         (157 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.45 
SB_34153| Best HMM Match : DUF972 (HMM E-Value=0.17)                   27   3.2  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  

>SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 8   SVYELKVSKYNSKFPYLPSDNAMCVLVYV 94
           S Y +  S+Y S+FP LPS N  C +  V
Sbjct: 80  SQYGIPCSRYFSEFPQLPSYNTACYVAVV 108


>SB_34153| Best HMM Match : DUF972 (HMM E-Value=0.17)
          Length = 473

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 134 HVFTHFV*PKFKCVRILKHTSRYHSANKE 48
           HV   F+   F C+R+  H +   SAN+E
Sbjct: 20  HVIPRFLNHSFSCLRVECHRANNRSANQE 48


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 17  ELKVSKYNSKFPYLPSDNAMCVLVYVHI 100
           +L+ S YN     LPS +   +LV VH+
Sbjct: 764 KLRTSNYNKIVEMLPSSDGCHLLVVVHV 791


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,282,775
Number of Sequences: 59808
Number of extensions: 59006
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 16,821,457
effective HSP length: 31
effective length of database: 14,967,409
effective search space used: 299348180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)