Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J09
         (157 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50311-1|AAA92307.1|  492|Caenorhabditis elegans Hypothetical pr...    29   0.45 
U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical ...    25   9.6  
AC024751-1|ABF71719.1|  261|Caenorhabditis elegans Hypothetical ...    25   9.6  
AC006810-5|AAF59629.2|  516|Caenorhabditis elegans Cytochrome p4...    25   9.6  

>U50311-1|AAA92307.1|  492|Caenorhabditis elegans Hypothetical
           protein C25E10.5 protein.
          Length = 492

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 48  FLICRVITRCVF*YTYTFEFWS 113
           FL+C + + CVF  TY +EF S
Sbjct: 345 FLVCTIASGCVFLITYPYEFSS 366


>U23177-7|AAM22053.1|  867|Caenorhabditis elegans Hypothetical
           protein C56G2.1a protein.
          Length = 867

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 27  SVNIILSFLICRVITRCVF*YTYTFEFWSNKMSKHM 134
           S    LS+  C VITR +         W+N ++K++
Sbjct: 32  STTTSLSYAACDVITRHLISMLLEISNWTNDLAKYL 67


>AC024800-5|AAF60724.1|  966|Caenorhabditis elegans Hypothetical
           protein Y49F6A.1 protein.
          Length = 966

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 14  YELKVSKYNSKFPYLP 61
           Y LK   Y  KFPYLP
Sbjct: 379 YYLKQYNYKLKFPYLP 394


>AC024751-1|ABF71719.1|  261|Caenorhabditis elegans Hypothetical
           protein Y18H1A.14 protein.
          Length = 261

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 2   DLSVYELKVSKYNSKFPYLPSDN 70
           +L+  EL V+ + +K  YLP+DN
Sbjct: 146 ELTELELLVNGHTAKIRYLPADN 168


>AC006810-5|AAF59629.2|  516|Caenorhabditis elegans Cytochrome p450
           family protein 32B1 protein.
          Length = 516

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 157 SLKLAVEYMCLLILFDQNSNVYVY*NTHRVITRQIRKLR 41
           +L L + Y   LI F Q  ++  + +  ++ TR+ +KLR
Sbjct: 5   ALVLLLTYFAYLI-FRQKDDILQFLHVRKICTREFKKLR 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,537
Number of Sequences: 27780
Number of extensions: 44029
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)