Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J08
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0023 + 146841-147002,147962-148036,148181-148234,148284-14...    29   2.3  

>02_01_0023 +
           146841-147002,147962-148036,148181-148234,148284-148388,
           148736-148836,148937-148992,149284-149324,149427-149527,
           149629-149724,149905-149969,150048-150119,150537-150772,
           150874-150904,151020-151165,151264-151365,151469-151513,
           151614-151780,151812-152214
          Length = 685

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 159 SAAPNN*NWSPRISRRKIGRYQFSLEYWVL 70
           +AA ++  W  R  RRKIGR  F   Y+VL
Sbjct: 9   AAAVHHEGWMVRYGRRKIGRSFFHTRYFVL 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,476,614
Number of Sequences: 37544
Number of extensions: 161589
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)