Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J07
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    27   0.63 
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    26   1.9  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   2.5  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   2.5  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   2.5  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    25   3.4  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    25   4.4  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    25   4.4  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    24   5.9  

>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +3

Query: 165 ESPTVLAKR----KFVKSNSWCPEEDIEFDAYCDADNPKTI 275
           E P  +AKR          +W P+ED E D Y D ++ + I
Sbjct: 372 EEPVAVAKRVPKGTSTYQATWIPDEDEESDQYSDVEDTEVI 412


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 55  TPSG**LLPLTFSIILQCLSFYLNLP 132
           TPS    LPLTF+   Q L+ YL LP
Sbjct: 115 TPSQAATLPLTFTTASQGLNQYLGLP 140


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 126 PTDTFTIEKTTMGESPTVLAKRKFVKSNSWCPEEDIEFDAY 248
           P+D  T+   T GES T L  +++ K   W   E ++  A+
Sbjct: 532 PSDALTVRSETFGESNTPLTLQQWHK---WITRESVKRIAF 569


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 222 EEDIEFDAYCDADNPKTISYKDVVKAYSTN*R*NTKD--TTW 341
           E  IE+  + +  + KT+S+     AY  +    TKD  TTW
Sbjct: 150 EGPIEYPVFLNVQDSKTVSFYGPTSAYDLSLPDITKDNKTTW 191


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 150 KTTMGESPTVLAKRKFVKSNSWCPEEDIEFDAYCDADNPKTI 275
           + ++GE P + ++ + +K  S  PE+D+  D    A   + +
Sbjct: 472 RASLGEVPILASEEQLLKDVSNVPEDDLLIDISAPASTSRKV 513


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 102 AMPKFLSKPTDTFTIEKTTMGESPTVLAKRKFVKSNSW 215
           ++P   ++  D   IEK  +  +P+V +K  F K  S+
Sbjct: 248 SLPTVSNQEKDEGVIEKVAVNNTPSVSSKSPFPKKKSF 285


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 93  NNFAMPKFLSKPTDTFTIEKTTMGESP 173
           NNF+  +  +K   TFT+ KTT    P
Sbjct: 197 NNFSGLESSTKGNGTFTVSKTTRKNQP 223


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 320 SSLIGRICFYYVFITNS 270
           S+L+G ICF + FI N+
Sbjct: 6   SALVGFICFLHFFIVNA 22


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 198 VKSNSWCPEEDIEFDAYCDADNPKTISYKDVVK 296
           ++ N   P+E+ +     D DNP+ I Y  +V+
Sbjct: 346 LRINLLLPDENGKLKVCDDVDNPEPIKYGSIVE 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,333,058
Number of Sequences: 5004
Number of extensions: 24963
Number of successful extensions: 65
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)