Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J07
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173     29   1.0  
07_01_1105 - 10173039-10173156,10173715-10173716,10174550-101745...    27   3.1  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    27   3.1  
02_05_1000 + 33417357-33417600,33417692-33417744,33418376-334184...    27   5.3  
08_02_0654 - 19732679-19732837,19733234-19733479,19734470-197346...    26   7.1  
08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766     26   9.3  
04_01_0303 + 4132988-4133184,4133701-4134202,4134261-4134638,413...    26   9.3  
03_03_0142 + 14800317-14801240                                         26   9.3  

>09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173
          Length = 377

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 159 MGESPTVLAKRKFVKSNSWCPEEDIEFDAYCDA 257
           MG +P     +  VK   W PEED    AY DA
Sbjct: 1   MGRAPC--CDKATVKKGPWAPEEDAALKAYVDA 31


>07_01_1105 -
           10173039-10173156,10173715-10173716,10174550-10174584,
           10174696-10174765,10175163-10176707,10176770-10178062
          Length = 1020

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/56 (19%), Positives = 27/56 (48%)
 Frame = +3

Query: 93  NNFAMPKFLSKPTDTFTIEKTTMGESPTVLAKRKFVKSNSWCPEEDIEFDAYCDAD 260
           N   M + +    +  TI+++ +  +    A+   + +N   PE+++  D++C  D
Sbjct: 504 NECRMIQHIVSGNECRTIQQSNLNRADKTSARHLSIVNNESHPEQELSLDSFCGQD 559


>04_03_0496 +
           16549333-16549465,16549620-16550020,16550412-16550880,
           16552038-16552076,16553151-16553272,16553531-16553677,
           16554097-16554186,16554274-16554398,16554567-16554772,
           16554951-16555075,16555528-16555722,16556295-16556337,
           16556762-16557267,16558198-16558570,16559772-16560062,
           16560132-16561101,16561196-16561892,16562378-16562658,
           16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 72  TITLNLFNNFAMPKFLSKPTDTFTIEKTTMGES 170
           ++ LNL NN  +P+ +    DTF   + T+ +S
Sbjct: 890 SLYLNLVNNLRLPRLIPLHIDTFLALRITLSDS 922


>02_05_1000 +
           33417357-33417600,33417692-33417744,33418376-33418413,
           33418720-33419114,33420092-33420221,33420512-33421343
          Length = 563

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 147 EKTTMGESPTVLAKRKFVKSNSWCPEEDIEFDAYCD 254
           ++  MG +P     +  VK   W PEED +  AY +
Sbjct: 195 KELVMGRAPC--CDKASVKKGPWSPEEDAKLKAYIE 228


>08_02_0654 -
           19732679-19732837,19733234-19733479,19734470-19734667,
           19735085-19735201,19735289-19735459,19735632-19735893,
           19736205-19736353
          Length = 433

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 120 SKPTDTFTIEKTTMGESPTVLAKRKFV 200
           S+P D F   K   G SP  ++K KF+
Sbjct: 17  SRPVDRFGFIKPEQGTSPDGISKSKFI 43


>08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766
          Length = 310

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 159 MGESPTVLAKRKFVKSNSWCPEEDIEFDAYCDADNP 266
           MG  P  +     VK   W PEED+   AY     P
Sbjct: 1   MGRPPCCVKAE--VKKGPWTPEEDLMLVAYVQEHGP 34


>04_01_0303 +
           4132988-4133184,4133701-4134202,4134261-4134638,
           4134657-4135301
          Length = 573

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +3

Query: 123 KPTDTFTIEKTTMGESPTVLAKRKFVKSNSWCPEEDIEFDAYCDADNPKTISYKDV 290
           +P  T  + K T   S  +L K    K +  CP       A CD     ++  KDV
Sbjct: 320 RPLPTMEVVKLTEQCSNVILHKLPEKKKDPGCPTITCSIGALCDLGVSVSVMPKDV 375


>03_03_0142 + 14800317-14801240
          Length = 307

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 159 MGESPTVLAKRKFVKSNSWCPEEDIEFDAYCDADNP 266
           MG  P    +++ VK   W PEED+   +Y     P
Sbjct: 1   MGRPPC--CEKEGVKKGPWTPEEDMVLASYVQEHGP 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,729,334
Number of Sequences: 37544
Number of extensions: 131994
Number of successful extensions: 279
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)