Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_J07
(348 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_5239| Best HMM Match : AbfB (HMM E-Value=1.9) 29 1.4
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7) 29 1.4
SB_41744| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_11206| Best HMM Match : DUF1530 (HMM E-Value=4.9) 29 1.4
SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5) 29 1.4
SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.8
SB_3154| Best HMM Match : DUF812 (HMM E-Value=1.8) 27 3.2
SB_53113| Best HMM Match : RVT_1 (HMM E-Value=2.2) 27 4.2
SB_57254| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3
>SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 29.1 bits (62), Expect = 1.0
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 156 TMGESPTVLAKRKFVKSNSWCPEE--DIEFDAYCDADNPKTISYKDVVKAYS 305
T+G+ F K +SWCPE+ +I +AY A + +S K YS
Sbjct: 46 TLGKRCDFSETPAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTKQGKIYS 97
>SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 657
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 195 FVKSNSWCPEE--DIEFDAYCDADNPKTISYKDVVKAYS 305
F K +SWCPE+ +I +AY A + +S K YS
Sbjct: 114 FRKKSSWCPEKGREIAIEAYAKALEEEILSSTKQGKIYS 152
>SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 803
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 195 FVKSNSWCPEE--DIEFDAYCDADNPKTISYKDVVKAYS 305
F K +SWCPE+ +I +AY A + +S K YS
Sbjct: 446 FRKKSSWCPEKGREIAIEAYAKALEEEILSSTKQGKIYS 484
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 195 FVKSNSWCPEE--DIEFDAYCDADNPKTIS 278
F K +SWCPE+ +I +AY A + +S
Sbjct: 207 FRKKSSWCPEKGREIAIEAYAKALEEEILS 236
>SB_5239| Best HMM Match : AbfB (HMM E-Value=1.9)
Length = 456
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 195 FVKSNSWCPEE--DIEFDAYCDADNPKTISYKDVVKAYS 305
F K +SWCPE+ +I +AY A + +S K YS
Sbjct: 145 FRKKSSWCPEKGREIAIEAYAKALEEEILSSTKQGKIYS 183
>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
Length = 535
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 195 FVKSNSWCPEE--DIEFDAYCDADNPKTISYKDVVKAY 302
F K +SWCPE+ +I +AY A K +S K Y
Sbjct: 217 FRKKSSWCPEKGREIAIEAYAKALEEKILSSTKQGKIY 254
>SB_41744| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 195 FVKSNSWCPEE--DIEFDAYCDADNPKTISYKDVVKAY 302
F K +SWCPE+ +I +AY A K +S K Y
Sbjct: 121 FRKKSSWCPEKGREIAIEAYAKALEEKILSSTKQGKIY 158
>SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 195 FVKSNSWCPEE--DIEFDAYCDADNPKTISYKDVVKAYS 305
F K +SWCPE+ +I +AY A + +S K YS
Sbjct: 125 FRKKSSWCPEKSREIAIEAYAKALEEEILSSTKQGKIYS 163
>SB_11206| Best HMM Match : DUF1530 (HMM E-Value=4.9)
Length = 271
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 195 FVKSNSWCPEE--DIEFDAYCDADNPKTISYKDVVKAYS 305
F K +SWCPE+ +I +AY A + +S K YS
Sbjct: 98 FRKKSSWCPEKGREIAIEAYAKALEEEILSSTKQGKIYS 136
>SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5)
Length = 422
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 195 FVKSNSWCPEE--DIEFDAYCDADNPKTISYKDVVKAYS 305
F K +SWCPE+ +I +AY A + +S K YS
Sbjct: 109 FRKKSSWCPEKGREIAIEAYAKALEEEILSSTKQGKIYS 147
>SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 195 FVKSNSWCPEE--DIEFDAYCDADNPKTISYKDVVKAYS 305
F K SWCPE+ +I +AY A + +S K YS
Sbjct: 849 FRKKTSWCPEKGREIAIEAYAKALEEEILSSNKQGKFYS 887
>SB_3154| Best HMM Match : DUF812 (HMM E-Value=1.8)
Length = 815
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 201 KSNSWCPEE--DIEFDAYCDADNPKTISYKDVVKAYS 305
K +SWCPE+ +I +AY A + +S K YS
Sbjct: 547 KKSSWCPEKGREIAIEAYAKALEEEILSSTKQDKIYS 583
>SB_53113| Best HMM Match : RVT_1 (HMM E-Value=2.2)
Length = 359
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 195 FVKSNSWCPEE--DIEFDAYCDADNPKTISYKDVVKAYST 308
F K +SWCPE+ +I +AY A + +S V+ T
Sbjct: 114 FRKKSSWCPEKGREIAIEAYAKALEEEILSSTKQVRDMGT 153
>SB_57254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 195 FVKSNSWCPEE--DIEFDAYCDADNPKTISYKDVVKAYST 308
F+K +SWC E+ +I +AY A + +S V+ T
Sbjct: 49 FIKKSSWCSEKGREIAIEAYAKALEEEILSSTKQVRDMGT 88
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,407,890
Number of Sequences: 59808
Number of extensions: 169764
Number of successful extensions: 317
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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