Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J07
         (348 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45380.1 68418.m05577 sodium:solute symporter family protein ...    28   2.0  
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    27   2.6  
At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containi...    27   2.6  
At4g17785.1 68417.m02654 myb family transcription factor (MYB39)...    27   3.4  
At5g57620.1 68418.m07198 myb family transcription factor (MYB36)...    27   4.5  
At3g22670.1 68416.m02861 pentatricopeptide (PPR) repeat-containi...    27   4.5  
At5g66540.1 68418.m08389 expressed protein ; supported by full-L...    26   7.9  

>At5g45380.1 68418.m05577 sodium:solute symporter family protein
           contains Pfam profile: PF00474 sodium:solute symporter
           family
          Length = 694

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 344 SPSGVFGISSLIGRICFYYVFITNSFWIVRITVR 243
           S   VFG+ +++G   F  VF+ N +W+  I  R
Sbjct: 292 SGGAVFGLINIVGN--FGTVFVDNGYWVSAIAAR 323


>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
            (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 117  LSKPTDTFTIEKTTMGESPTV--LAKRKFVKSNSW-CPEEDIEFDAY 248
            LS  T    +++ T  ++  +  L+K+K  K NS  CPEEDI  + +
Sbjct: 990  LSSSTVVLALDRITQQDTLVIGSLSKKKKQKKNSKSCPEEDINSEEF 1036


>At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 534

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 195 FVKSNSWCPEEDIEFDAYCDADNPKTISYKDVVKAY 302
           FVK  ++   EDI  +  C    P T++Y  +V  +
Sbjct: 366 FVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGF 401


>At4g17785.1 68417.m02654 myb family transcription factor (MYB39)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 360

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 159 MGESPTVLAKRKFVKSNSWCPEEDIEFDAY 248
           MG SP    + K VK   W PEED +  AY
Sbjct: 1   MGRSPCC-DQDKGVKKGPWLPEEDDKLTAY 29


>At5g57620.1 68418.m07198 myb family transcription factor (MYB36)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 333

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 159 MGESPTVLAKRKFVKSNSWCPEEDIEFDAYCD 254
           MG +P     +  VK   W PEED++   Y D
Sbjct: 1   MGRAPC--CDKANVKKGPWSPEEDVKLKDYID 30


>At3g22670.1 68416.m02861 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 562

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +3

Query: 219 PEEDIEFDAYCDADNPKTISYKDVVKAYS 305
           P EDI  D  CD  N K  S++DVVK  S
Sbjct: 98  PVEDI--DKVCDFLNKKDTSHEDVVKELS 124


>At5g66540.1 68418.m08389 expressed protein ; supported by
           full-Length cDNA gi:12057175 from [Arabidopsis thaliana]
          Length = 524

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 222 EEDIEFDAYCDADNPKT 272
           EED+EFDA+   D+ +T
Sbjct: 222 EEDVEFDAFAGGDDEET 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,641,229
Number of Sequences: 28952
Number of extensions: 119047
Number of successful extensions: 258
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)