Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J06
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0249 - 1644280-1645161,1645328-1645432,1646322-1646805,164...    33   0.15 
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241...    30   1.4  
01_06_0120 + 26622285-26622433,26623156-26623219,26623310-266233...    30   1.4  
03_05_1137 + 30652967-30653183,30653281-30653485,30653696-306537...    30   1.8  
03_02_0842 + 11682332-11683802,11683858-11683940,11684751-116865...    29   2.4  
03_05_1136 + 30634685-30634919,30635008-30635303,30635398-306357...    29   3.1  
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240...    29   4.1  
07_01_0504 + 3756714-3757054,3757205-3757259,3757403-3757477,375...    28   7.2  
12_02_0503 - 19756561-19757991,19758606-19759967                       27   9.6  

>02_01_0249 -
           1644280-1645161,1645328-1645432,1646322-1646805,
           1647680-1647884,1648538-1648808
          Length = 648

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -1

Query: 514 NLVRSG*SNTDAVRPVEDCSSESIYEHAPVNAFP*P-ASSFDEVVIVLGEVQYAENFNGL 338
           +L   G +  D +R   D ++E ++  AP   F    A  FD  V+V+GE  YAE     
Sbjct: 481 DLTAGGTTILDGIRRAVDAATEVVFAEAPDAGFMRRNAGRFDAAVVVVGEPPYAETLGDN 540

Query: 337 FHL 329
            +L
Sbjct: 541 LNL 543


>05_05_0051 +
           21923402-21923763,21923861-21923951,21924048-21924196,
           21924279-21924522,21924664-21924768,21924842-21925024,
           21925118-21925319,21925896-21926372,21926680-21926771,
           21927265-21927444
          Length = 694

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 484 DAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAE 353
           +A++      +E +YE  P  A       F   V+V+GEV YAE
Sbjct: 451 EAIKESVGAETEVVYEECPTEATV-ETGEFSYAVVVVGEVPYAE 493


>01_06_0120 +
           26622285-26622433,26623156-26623219,26623310-26623399,
           26623588-26623644,26623832-26623880,26624320-26624396,
           26624918-26624957,26625037-26625131,26625525-26625689,
           26625777-26625887,26625971-26626058,26626715-26626781,
           26626955-26627063,26627155-26627272,26628345-26628590,
           26628956-26629095,26629262-26629444,26629560-26629679,
           26629932-26629967
          Length = 667

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query: 300 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQI 133
           P GSM I+    N    S  EY++V +  +IY L +++ S +  G S  F+SF++ +
Sbjct: 516 PDGSMKIIDRKKNIFKLSQGEYVAVENLENIYGLVSAIDSIWVYGNS--FESFLVAV 570


>03_05_1137 +
           30652967-30653183,30653281-30653485,30653696-30653786,
           30653904-30654046,30654186-30654429,30654536-30654640,
           30654985-30655167,30655255-30655459,30655552-30656036
          Length = 625

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -1

Query: 514 NLVRSG*SNTDAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAENFNGLF 335
           N + +G +   A++   D S+  +Y   P ++       +D  ++V+GE  YAE F    
Sbjct: 460 NNITAGTTILSAIKATVDPSTTVVYSENPDSSVV-TGDKYDYAIVVVGEPPYAEGFGDNL 518

Query: 334 HL 329
           +L
Sbjct: 519 NL 520


>03_02_0842 +
           11682332-11683802,11683858-11683940,11684751-11686553,
           11687783-11688633,11689230-11689299,11689597-11689641
          Length = 1440

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
 Frame = +2

Query: 164 LQPTVYEDIKEVAREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNALQMEQA 343
           L PT+Y+D+KE    Y    +T+   K           +   +  G+   H  A+ ME  
Sbjct: 297 LAPTMYDDVKEYLNWYGTRRDTNDKLKDPNAPVIGLVLQRSHIVTGD-DGHYVAVIMELE 355

Query: 344 VKVFRIL-YFAKDYDYFIKTACWLRERINGGMFVYALTA 457
            K  +++  FA   D+   T  +L + I G  FV A+ +
Sbjct: 356 AKGAKVIPIFAGGLDFSGPTQRYLVDPITGKPFVNAVVS 394


>03_05_1136 +
           30634685-30634919,30635008-30635303,30635398-30635790,
           30635856-30636348,30636422-30636918
          Length = 637

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 514 NLVRSG*SNTDAVRPVEDCSSESIY-EHAPVNAFP*PASSFDEVVIVLGEVQYAE 353
           N V +G +  +A++   D S+   Y EH   ++    A  +D  V+V+GE  YAE
Sbjct: 468 NNVTAGTTILEAIKAAVDESTVIDYTEHPDKSSIAESAKEYDYAVVVVGEEPYAE 522


>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
            23824124-23824322,23824410-23824495,23824940-23825098,
            23825204-23825302,23825385-23826578,23826666-23826734,
            23828042-23828812
          Length = 997

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 155  NYVLQPTVYEDIKEVAREYMLEENTDKYSKSDV-VTKFMETFKMGMLPRGEVFVH 316
            N VL+P     I+ +ARE+M++    K    DV + KF +   M  L +    +H
Sbjct: 939  NIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMMNELAQQAADLH 993


>07_01_0504 +
           3756714-3757054,3757205-3757259,3757403-3757477,
           3757638-3757729,3757914-3757995,3758138-3758221,
           3758326-3758445
          Length = 282

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 369 KYSMRKTLTACSICNAFV*TKTSPRGSMPILKV 271
           K+     +TACS CN+    KT  + +M +LKV
Sbjct: 209 KWEWENLVTACSRCNSRKGQKTVEQANMKLLKV 241


>12_02_0503 - 19756561-19757991,19758606-19759967
          Length = 930

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 235 VLEIR-CCYEIHGDLQNGHATAW*GL-RSHKC 324
           VL+I  CC E+HG+ Q+G  + W  + R H C
Sbjct: 894 VLDINGCCNELHGECQSG-GSEWSKICRIHSC 924


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,553,980
Number of Sequences: 37544
Number of extensions: 358227
Number of successful extensions: 937
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)