Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_J06
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 38 0.007
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 37 0.010
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 33 0.16
At5g55480.1 68418.m06910 glycerophosphoryl diester phosphodieste... 31 0.86
At5g58050.1 68418.m07265 glycerophosphoryl diester phosphodieste... 30 1.1
At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein bet... 30 1.1
At4g26690.1 68417.m03846 glycerophosphoryl diester phosphodieste... 29 2.0
At5g27290.1 68418.m03258 expressed protein predicted proteins, A... 28 4.6
At5g21222.1 68418.m02532 protein kinase family protein contains ... 28 4.6
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 28 4.6
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 28 4.6
At1g43780.1 68414.m05043 serine carboxypeptidase S10 family prot... 28 4.6
At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containi... 28 6.1
At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase, puta... 28 6.1
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 28 6.1
At1g66970.1 68414.m07615 glycerophosphoryl diester phosphodieste... 28 6.1
At1g03190.2 68414.m00297 DNA repair protein / transcription fact... 27 8.0
At1g03190.1 68414.m00296 DNA repair protein / transcription fact... 27 8.0
>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
Length = 135
Score = 37.5 bits (83), Expect = 0.007
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 86 VIGKDSLMKADVKMKEICIMKLLNYV-LQPTVYE---DIKEVAREYMLEENTDKYSK-SD 250
VI KDS K K + C +KL+NY L PT Y D+KEVA L+ K + +
Sbjct: 53 VIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKE 112
Query: 251 VVTKFMETFKMG 286
K E FK G
Sbjct: 113 AKAKLEERFKTG 124
>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
tuberosum]
Length = 135
Score = 37.1 bits (82), Expect = 0.010
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 86 VIGKDSLMKADVKMKEICIMKLLNYV-LQPTVYE---DIKEVAREYMLEENTDKYSK-SD 250
VI KDS K K + C +KL+NY L PT Y D+KEVA L+ K + +
Sbjct: 53 VIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKE 112
Query: 251 VVTKFMETFKMG 286
K E FK G
Sbjct: 113 AKAKLEERFKTG 124
>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)
Length = 135
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = +2
Query: 86 VIGKDSLMKADVKMKEICIMKLLNYV-LQPTVYE---DIKEVAREYMLEENTDKYSK-SD 250
VI KDS K K + C K++NY + PT Y D+K V + K + +
Sbjct: 53 VIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKE 112
Query: 251 VVTKFMETFKMG 286
KF E FK G
Sbjct: 113 AKAKFEERFKTG 124
>At5g55480.1 68418.m06910 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 766
Score = 30.7 bits (66), Expect = 0.86
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Frame = +2
Query: 173 TVYEDIKEVAREYM--LEENTDKYSKSDVVTK--FMETFKMGMLPRGEVFVHTNALQMEQ 340
TVY+ ++E R+ + E+ K++ + V++K T + + ++ Q+
Sbjct: 562 TVYK-VEETIRDILDTAIEDIKKFADAVVISKKSVFPTSESFTTGQTKLVERLQKFQLPV 620
Query: 341 AVKVFRILYFAKDYDYFIKTACWLRER-----INGGMFVYALTAAVFHRSDCVGITLPAP 505
V+VFR + ++ +D+F + ING + + LTAA + R+ C+ P
Sbjct: 621 YVEVFRNEFVSQPWDFFADATVEINSHVTGAGINGTITEFPLTAARYKRNSCLTRKDVPP 680
Query: 506 YEI 514
Y I
Sbjct: 681 YMI 683
>At5g58050.1 68418.m07265 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 753
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +2
Query: 344 VKVFRILYFAKDYDYF----IKTACWLRER-INGGMFVYALTAAVFHRSDCVGITLPAPY 508
V V R Y A +DYF I+ A ++ R ++G + + TA + RS C + PY
Sbjct: 608 VSVLRNEYIAIAFDYFSDPTIELATFIAGRGVDGVITEFPATATRYLRSPCSDLNKDQPY 667
Query: 509 EIYP 520
I P
Sbjct: 668 AILP 671
>At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein
beta-glucosidase, common nasturtium, PIR:T10521
Length = 626
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 481 AVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAENF 347
AV+ D ++ IY P F A FD ++ +GE YAE F
Sbjct: 476 AVKKTVDPKTQVIYNQNPDTNFV-KAGDFDYAIVAVGEKPYAEGF 519
>At4g26690.1 68417.m03846 glycerophosphoryl diester
phosphodiesterase family protein weak similarity to
glycerophosphodiester phosphodiesterase [Borrelia
hermsii] GI:1399038; contains Pfam profile PF03009:
Glycerophosphoryl diester phosphodiesterase family
Length = 759
Score = 29.5 bits (63), Expect = 2.0
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Frame = +2
Query: 209 YMLEENTDKYSKSDV--VTKFMETF---KMGMLPRGEVFVHTNA-----LQMEQA---VK 349
Y +EEN S + + KF + K+ + P + F+ T LQ Q V+
Sbjct: 557 YKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQTNVVEKLQKSQLPVYVE 616
Query: 350 VFRILYFAKDYDYFIKTACWLRERI-----NGGMFVYALTAAVFHRSDCVGITLPAPY 508
+F+ + ++ YD+F + I NG + + TAA + R+ C+G PY
Sbjct: 617 LFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARYKRNLCLGRKETIPY 674
>At5g27290.1 68418.m03258 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 341
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 263 FMETFKMGMLPRGEVFVHTNALQMEQAVKVFRILYFAKDYDYFIKTACWLRERINGGMFV 442
F+ + +G+LPRG ALQ E ++ + F DY++ E +N G
Sbjct: 191 FLVAYLVGILPRGYTLSSLEALQKEGSLNIQAGSAFV-DYEFL--------EEVNSG--- 238
Query: 443 YALTAAVFHRSDCVGIT-LPAPYEIYPY 523
++A + +R C+ + + Y +Y Y
Sbjct: 239 -KVSATMLNRFSCIALAGVATEYLLYGY 265
>At5g21222.1 68418.m02532 protein kinase family protein contains
Pfam profile: PF00069 protein kinase domain
Length = 831
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 83 VVIGKDSLMK---ADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEE 223
+++ KD ++K A+ +EI IMKL+N+ +YE + A+ Y++ E
Sbjct: 42 MILDKDKVLKHKMAEQIKREISIMKLINHPNVVQLYEVLASKAKIYIVLE 91
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 302 EVFVHT-NALQMEQAVKVFRILYFAKDYDYFIKTACWLRERIN 427
E F HT N ++ + FR+ F D +I T C+ R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 302 EVFVHT-NALQMEQAVKVFRILYFAKDYDYFIKTACWLRERIN 427
E F HT N ++ + FR+ F D +I T C+ R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537
>At1g43780.1 68414.m05043 serine carboxypeptidase S10 family protein
similar to serine carboxylase II-3 GB:CAA55478 GI:474392
from [Hordeum vulgare]
Length = 479
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 473 SDCVGITLPAPYEIYPYFFVDSHVINKAFMMKMTKAAT-DPVLMNYYGI 616
SD +G+T+ + Y F DSH I+K + +A T +NYY I
Sbjct: 242 SDELGLTIMNQCDFEDYTFTDSHNISKLCEAAVNQAGTIITQYVNYYDI 290
>At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 620
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 248 DVVTKFMETFKMGMLPRGEVFVHT-NALQMEQAVKVFRILYFAKDYDYFIK 397
+ ++KFME KMG+ P F A V+ ++++++ + DY +K
Sbjct: 331 EAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLK 381
>At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase,
putative / long-chain acyl-CoA synthetase, putative
similar to acyl-CoA synthetase (MF7P) gi:1617270 from
Brassica napus
Length = 666
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 300 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQIS 130
P GSM I+ N + EY++V + ++YS + S + G S F+SF++ I+
Sbjct: 508 PNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEVIESIWVYGNS--FESFLVAIA 563
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/52 (23%), Positives = 22/52 (42%)
Frame = +3
Query: 171 QLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKWACYRVVRSSFTQMR 326
Q+C+ R + G CW K R + P+ L P Y + + +++
Sbjct: 783 QVCSDLERDANGKACWSKKRKFDKIPLGLNTLVAPEDVCSYESMLAGLFRLK 834
>At1g66970.1 68414.m07615 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family
Length = 763
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +2
Query: 329 QMEQAVKVFRILYFAKDYDYFIKTACWLRERI-----NGGMFVYALTAAVFHRSDCVGIT 493
Q+ V++FR + ++ YD+F + I NG + + TAA + R+ C+G
Sbjct: 617 QLPVYVELFRNEFVSQAYDFFSDATVEINAYIYGAGINGTITEFPFTAARYKRNRCLGRE 676
Query: 494 LPAPY 508
PY
Sbjct: 677 EVPPY 681
>At1g03190.2 68414.m00297 DNA repair protein / transcription factor
protein (UVH6) identical to DNA repair/transcription
factor protein (UVH6) gi:22651569 gb:AY090788
Length = 758
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 461 VFHRSDCVGITLP--APYEIYPYFFVDSHVINKAFMMKMTKAATDPVLM 601
VF R V IT +P ++YP + V++++F M MT+ P+++
Sbjct: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRSFKMSMTRDCICPMVL 495
>At1g03190.1 68414.m00296 DNA repair protein / transcription factor
protein (UVH6) identical to DNA repair/transcription
factor protein (UVH6) gi:22651569 gb:AY090788
Length = 758
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 461 VFHRSDCVGITLP--APYEIYPYFFVDSHVINKAFMMKMTKAATDPVLM 601
VF R V IT +P ++YP + V++++F M MT+ P+++
Sbjct: 447 VFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRSFKMSMTRDCICPMVL 495
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,029,686
Number of Sequences: 28952
Number of extensions: 276441
Number of successful extensions: 791
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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