Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J04
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    28   0.80 
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   2.5  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    25   5.7  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   7.5  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.5  

>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -2

Query: 227 NRESIQKINKTTTNGYE*MNSPICL*TSNMHTCLYSLWQINYFSCTFQLLTWHKIWSNRV 48
           N E ++K    TT   + +N+   +    MH   + L Q NY    + L   H++ S+  
Sbjct: 125 NTEFLEKFYDVTTKALQNLNNERLMLKVLMHVARFLLTQKNYHKFKYLLRQMHELLSDEN 184

Query: 47  DNV 39
           ++V
Sbjct: 185 NSV 187


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 317 SNFCCNDKRFFFVGGANDLLSVSVYFCPVERYNIHVQKSLSPNIVM*GGIFFFVI 481
           + F   ++RF     ANDLL + +YF  V  Y + + K  S  +    GI  +++
Sbjct: 398 NRFAKINERFEEKDSANDLLKMQMYFLDV-AYELSLAKKRSSKVQAGLGIIMYML 451


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 137 HTCLYSLWQINYFSCTFQLLTWHKIWSNRVDNVHLTDFKRESFK 6
           H+   ++ Q N  +    LL W  +W N+  +V + D+  E  K
Sbjct: 57  HSNDLAICQHNQLNVAPHLLKWTCVWPNQSSHVEVIDYNIECKK 100


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 308 SIVSNFCCNDKRFFFVGGANDLLSVSVYFCPVERYN 415
           S V +FC N +RF F     D++ ++V   P+E  N
Sbjct: 449 SAVHSFCGNFRRFMF-----DIVRLTVSITPIESLN 479


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +2

Query: 305 DSIVSNFCCNDKRFFFVGGAND---LLSVSVYFCPVERYNIHVQKSLSPNIV 451
           D+  +NF C D  +FF   +     LL + +   P ERYN+   +   P  +
Sbjct: 659 DNCEANFFCKDGTYFFRTTSRKQILLLEIGILIKP-ERYNLFKYRVYLPQFL 709


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,826
Number of Sequences: 5004
Number of extensions: 45869
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)