Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J04
         (555 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    29   0.14 
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   3.9  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 28.7 bits (61), Expect = 0.14
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = -1

Query: 351  KKKRLSLQQKFDTIESEVNNLNKVIRSF*ADLNPLWLH-IIWEPRINP-----EDK*DNY 190
            K KRL  +Q   TIE+++      +  +   L PL LH I  EP   P     E++ D+Y
Sbjct: 1004 KMKRLEFEQILQTIETKLQETKDTLPHWQLQLKPLKLHEIPEEPPQEPLKEYTEEELDSY 1063

Query: 189  K 187
            K
Sbjct: 1064 K 1064


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 443  WVTNFFEHEYCTALQGR 393
            W+   FEH + TA QG+
Sbjct: 3032 WINEIFEHFFNTANQGK 3048


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,982
Number of Sequences: 2352
Number of extensions: 10495
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51722361
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)