Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J04
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92804-5|CAD89722.2|  320|Caenorhabditis elegans Hypothetical pr...    32   0.32 
Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81529-9|CAB04302.1|  277|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF301606-1|AAG30870.1|  277|Caenorhabditis elegans cadmium-induc...    28   3.9  
U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric chr...    28   5.2  
AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like p...    28   5.2  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z92804-5|CAD89722.2|  320|Caenorhabditis elegans Hypothetical
           protein K05D4.8 protein.
          Length = 320

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 200 YLSSGLIRGSHIMCNHRGFRSA*KDLMTLFRLLTSDSIVSNFCC 331
           Y+S  LI+ S+++CNHR       +L T F  + S ++   FCC
Sbjct: 260 YISIFLIQASYLVCNHR-------NLKTFFDSIDSRNVCKLFCC 296


>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 347 FFVGGANDLLSVSVYFCPVERYNIHVQKSLSPNIVM*GGIFFFVI 481
           F+V     +L   VY CP+ER N   ++ L  +  +  G+ F ++
Sbjct: 9   FYVVSNKFILWQEVYECPIERRNSRFERPLLGSFFLAFGVLFIIL 53


>Z81529-9|CAB04302.1|  277|Caenorhabditis elegans Hypothetical
           protein F35E8.11 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 472 EKYSTLHDNIG*QTFLNMNIVPLYRAEINTN 380
           E Y T+ + IG  TFLN  ++PL +A I  N
Sbjct: 153 EFYKTIIEIIGLPTFLNFLLMPLLKAIIGKN 183


>AF301606-1|AAG30870.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-1 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 472 EKYSTLHDNIG*QTFLNMNIVPLYRAEINTN 380
           E Y T+ + IG  TFLN  ++PL +A I  N
Sbjct: 153 EFYKTIIEIIGLPTFLNFLLMPLLKAIIGKN 183


>U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 4 protein.
          Length = 866

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 372 KSFAPPTKKKRLSLQQKFDTIESEVNNLNKVIRSF 268
           K+F  PT+K   SLQ+ F+    + NN + + ++F
Sbjct: 332 KTFTKPTEKDESSLQRTFNVANRDENNDSTLQKTF 366


>AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like
           protein HCP-4 protein.
          Length = 866

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 372 KSFAPPTKKKRLSLQQKFDTIESEVNNLNKVIRSF 268
           K+F  PT+K   SLQ+ F+    + NN + + ++F
Sbjct: 332 KTFTKPTEKDESSLQRTFNVANRDENNDSTLQKTF 366


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 200 YLSSGLIRGSHIMCNHRGFRSA*KDLMTLFRLLTSDSIVSNFCC 331
           Y+S  LI+ S+++CNHR       +L      L S ++   FCC
Sbjct: 261 YISIFLIQVSYLVCNHR-------NLQLFLDSLKSRNVFKLFCC 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,982,721
Number of Sequences: 27780
Number of extensions: 246941
Number of successful extensions: 510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)