Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J04
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   3.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   3.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.8  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   6.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   6.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 332 NDKRFFFVGGANDLLSVSVYF 394
           N  RFFF+ G  ++L    YF
Sbjct: 11  NFDRFFFIEGMTNVLDFDYYF 31


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 92  YKRNNLFATDYTNKYAYYSSINI 160
           Y  NN    +Y NK  YY+ INI
Sbjct: 98  YNNNNYNNNNY-NKKLYYNIINI 119


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 92  YKRNNLFATDYTNKYAYYSSINI 160
           Y  NN    +Y NK  YY+ INI
Sbjct: 98  YNNNNYNNNNY-NKKLYYNIINI 119


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 169 IVLYVYRRVICIL 131
           ++LYVY R+ C++
Sbjct: 213 VMLYVYGRISCVI 225


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 135 MHITRL*TYRTIHSFIT 185
           M++  L TY ++HSF T
Sbjct: 914 MNVNMLDTYESVHSFPT 930


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -1

Query: 333 LQQKFDTIESEVNNLNKVIRS 271
           ++  FD + + + N+ K+I+S
Sbjct: 48  IKDLFDNVHNHIQNIFKIIKS 68


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -1

Query: 333 LQQKFDTIESEVNNLNKVIRS 271
           ++  FD + + + N+ K+I+S
Sbjct: 31  IKDLFDNVHNHIQNIFKIIKS 51


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 427 KKFVTQYCHVRWN 465
           K F T+Y H  WN
Sbjct: 454 KNFPTRYIHEPWN 466


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -1

Query: 246 WLHIIWEP 223
           WLH IW P
Sbjct: 83  WLHNIWRP 90


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +2

Query: 89  MYKRNNLFATDYTNKYAYYSSINI*DYSFIH 181
           ++  NN    +Y N Y  Y++ N  +Y  ++
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNYNNYKKLY 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,600
Number of Sequences: 438
Number of extensions: 3375
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)