Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J04
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15290.1 68417.m02341 cellulose synthase family protein simil...    28   4.8  
At5g55480.1 68418.m06910 glycerophosphoryl diester phosphodieste...    27   6.4  
At1g77310.1 68414.m09004 wound-responsive protein, putative simi...    27   6.4  
At5g42490.1 68418.m05172 kinesin motor family protein contains P...    27   8.4  

>At4g15290.1 68417.m02341 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880]
          Length = 757

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 140 MHTCLYSLWQINYFSCTFQLLTWHKIWS 57
           MH CLYSLWQ  + S  F + +W+ + S
Sbjct: 578 MH-CLYSLWQ--FMSLGFSVQSWYVVQS 602


>At5g55480.1 68418.m06910 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to Glycerophosphoryl diester phosphodiesterase
           precursor  (Glycerophosphodiester phosphodiesterase)
           (Surface-exposed lipoprotein D) (Protein D)
           (ImmunoglobulinD-binding protein) (IGD-binding protein)
           (SP:Q06282) {Haemophilus influenzae}
          Length = 766

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 498 YMRRSIITKKNIPPYM 451
           Y R S +T+K++PPYM
Sbjct: 667 YKRNSCLTRKDVPPYM 682


>At1g77310.1 68414.m09004 wound-responsive protein, putative similar
           to wound-responsive protein 14.05 (GI:16506638)
           [Castanea sativa]
          Length = 699

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 381 TESKSFAPPTKKKRLSLQQKFDTIESEVNNLNKVI 277
           TESK+    +KK   + + K+ T+E  + NL K++
Sbjct: 326 TESKTSIQISKKSGSNGRPKYSTLEKAIRNLEKLV 360


>At5g42490.1 68418.m05172 kinesin motor family protein contains Pfam
            domain, PF00225: Kinesin motor domain
          Length = 1087

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 143  NMHTCLYSLWQINYFSCTFQLLTWHKIWSNRVDNVHLTD 27
            N    LY  W +   S    L   HK+W+N  D  H+ +
Sbjct: 998  NQRIGLYQKWGVEVNSKQRSLQVAHKLWTNTQDMDHIKE 1036


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,894,159
Number of Sequences: 28952
Number of extensions: 212990
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)