Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_J03
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 244 5e-65
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 235 1e-62
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 221 2e-58
02_01_0759 - 5628913-5630870,5631023-5631047 32 0.25
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.57
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 0.76
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 1.3
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 4.0
06_02_0084 - 11547820-11548773 28 4.0
12_01_0730 + 6505759-6508806 27 7.1
09_06_0319 - 22293869-22293906,22294539-22295808 27 7.1
09_06_0088 + 20774901-20775491,20776172-20776687 27 9.3
06_01_1064 - 8609162-8610583 27 9.3
06_01_1060 + 8522131-8523606 27 9.3
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989... 27 9.3
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 244 bits (596), Expect = 5e-65
Identities = 111/152 (73%), Positives = 125/152 (82%)
Frame = +1
Query: 43 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 222
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 223 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINXMLSCAGADRLQTGMRGAFG 402
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RIN MLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 403 KPQGTVARVRIGQPIMSVRSSDRWKAQVLEAL 498
KPQGT ARV IGQ ++SVR + EAL
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKESNAKHAEEAL 152
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 235 bits (576), Expect = 1e-62
Identities = 107/148 (72%), Positives = 121/148 (81%)
Frame = +1
Query: 55 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 234
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 235 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINXMLSCAGADRLQTGMRGAFGKPQG 414
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RIN MLSCAGADRLQTGMRGAFGKP G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 415 TVARVRIGQPIMSVRSSDRWKAQVLEAL 498
T ARVRIGQ ++SVR D A EAL
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEAL 459
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 221 bits (541), Expect = 2e-58
Identities = 101/145 (69%), Positives = 116/145 (80%)
Frame = +1
Query: 64 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 243
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 244 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINXMLSCAGADRLQTGMRGAFGKPQGTVA 423
RI CNKY+ K+ GKD FH+R+R+HPFHV+RIN MLSCAGADRLQTGMRGAFGKPQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 424 RVRIGQPIMSVRSSDRWKAQVLEAL 498
RV IGQ ++SVR EAL
Sbjct: 124 RVDIGQVLLSVRCKPNNAVHASEAL 148
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 32.3 bits (70), Expect = 0.25
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -1
Query: 503 DARASRTCAFQRSLERTDIMGCPIRT---RATVPWGFPNAPRIPVWSLSAPAHDNIXLIR 333
DA + A SLER DI CP+ T A V G PN + V S S +D +R
Sbjct: 221 DAGLAEIAAGCPSLERLDITRCPLITDKGLAAVAHGCPNLLSLTVESCSGVGNDG---LR 277
Query: 332 MTWKGCSLIRMWN 294
+ CS I+ N
Sbjct: 278 AIGRSCSKIQALN 290
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.57
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 166 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 285
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 271 RGTCCNRYGLLPAPQNSAARTHQTLSARIVGSHPLS 164
R CC GL P P S+ R+ +L A S P+S
Sbjct: 179 RSRCCRHRGLSPPPSRSSPRSPSSLPAAPAASLPVS 214
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -1
Query: 446 MGCPIRTRATVPWGFPNAPRIPVWSLSAPAH 354
+ CP+ + + VP P++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 400 GKPQGTVARVRIGQPIMSVRSSD 468
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>06_02_0084 - 11547820-11548773
Length = 317
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 349 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWKAQVL 489
L G DR Q GMRGA P RVR +P R +W+ + L
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWRRRPL 181
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 318 PLPCHPDQXNVVVR 359
P+PCHPDQ + ++R
Sbjct: 42 PVPCHPDQASALLR 55
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 400 GKPQGTVARVRIGQPIMSVRSSD 468
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>09_06_0088 + 20774901-20775491,20776172-20776687
Length = 368
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -1
Query: 482 CAFQRSLERTDIMGCPIRTRATVPWGFPNAPRIPVWSLSAPAHDNIXLIRMTWK 321
C+ ++ T+++GCP+R V G P + R + P D + +WK
Sbjct: 219 CSDEQLAAVTEVLGCPVRLLPIVYLGLPLSVRKLGKADLQPMMDRLAKSLASWK 272
>06_01_1064 - 8609162-8610583
Length = 473
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 117 TPTKPRFRIRFILTISITSRWSAPHCVLQ 31
+P K RFR++ ++ + SA HCV Q
Sbjct: 266 SPAKARFRLKHVVRTLTGAEDSAHHCVFQ 294
>06_01_1060 + 8522131-8523606
Length = 491
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 117 TPTKPRFRIRFILTISITSRWSAPHCVLQ 31
+P K RFR++ ++ + SA HCV Q
Sbjct: 284 SPAKARFRLQHVVRTLTAAEDSAYHCVFQ 312
>04_03_1048 -
21998214-21998413,21998507-21998674,21998758-21998977,
21999571-21999761,21999869-21999962,22000257-22000500,
22001314-22001411,22001509-22001600,22001695-22001809,
22001890-22002036,22003031-22003255
Length = 597
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 459 AYRHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQHXI 340
A ++NG H + G+P T P E S+ R H +
Sbjct: 125 AIKNNGSLYAHVYFARSGYPVDPTDPEYEQSSAFGRTHPV 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,906,082
Number of Sequences: 37544
Number of extensions: 331840
Number of successful extensions: 924
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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