Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_J03
(527 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 240 5e-64
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 239 1e-63
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 238 1e-63
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 30 0.84
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 2.6
At1g53180.1 68414.m06027 expressed protein 29 2.6
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 3.4
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 3.4
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 4.5
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 5.9
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ... 27 7.8
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 27 7.8
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 27 7.8
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 27 7.8
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 27 7.8
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 240 bits (587), Expect = 5e-64
Identities = 110/152 (72%), Positives = 123/152 (80%)
Frame = +1
Query: 43 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 222
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 223 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINXMLSCAGADRLQTGMRGAFG 402
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RIN MLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 403 KPQGTVARVRIGQPIMSVRSSDRWKAQVLEAL 498
K GT ARV IGQ ++SVR D EAL
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHAQEAL 152
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 239 bits (584), Expect = 1e-63
Identities = 110/152 (72%), Positives = 123/152 (80%)
Frame = +1
Query: 43 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 222
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 223 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINXMLSCAGADRLQTGMRGAFG 402
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RIN MLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 403 KPQGTVARVRIGQPIMSVRSSDRWKAQVLEAL 498
K GT ARV IGQ ++SVR D EAL
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEAL 152
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 479 HRSLRLLRRAKFKFPG 526
H + LRRAKFKFPG
Sbjct: 146 HHAQEALRRAKFKFPG 161
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 238 bits (583), Expect = 1e-63
Identities = 110/152 (72%), Positives = 123/152 (80%)
Frame = +1
Query: 43 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 222
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 223 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINXMLSCAGADRLQTGMRGAFG 402
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RIN MLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 403 KPQGTVARVRIGQPIMSVRSSDRWKAQVLEAL 498
K GT ARV IGQ ++SVR D EAL
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEAL 152
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 479 HRSLRLLRRAKFKFPG 526
H + LRRAKFKFPG
Sbjct: 146 HHAQEALRRAKFKFPG 161
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 30.3 bits (65), Expect = 0.84
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 453 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQHXI 340
++NG H + GFP T P +P++S +R H +
Sbjct: 127 QNNGSLYAHIFFARSGFPIDPTDPEYQPLNSFSRTHAV 164
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 226 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINXMLSC 357
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 34 ENTMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 156
EN RR +R RYC + PYP S P+ K+ D+GK
Sbjct: 22 ENLFTRR-SRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 202 SDEYEQLSSEALEAGRICCNKYLV 273
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 166 SLSFCPSRKYGSLGQAH 116
SLSFCPS Y S G+ H
Sbjct: 327 SLSFCPSNIYSSTGRVH 343
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 250 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 339
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 154 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 327
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 305
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 256 CNKYLVKNCGKDQFHIRMRLHPFHVIRINXML 351
C K K C + I+ HPFH +R+ L
Sbjct: 143 CQKNFHKECVQSPLEIKHPSHPFHSLRLYSYL 174
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 325 HVIRINXMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQ 441
H+ RIN +L +D G+ G G + T+ARV Q
Sbjct: 240 HITRINSLLCLESSDVRMIGILGPPGIGKTTIARVLYDQ 278
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 280 SSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 173
SS+R +CC L+PA N A + A+I H
Sbjct: 62 SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 280 SSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 173
SS+R +CC L+PA N A + A+I H
Sbjct: 67 SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 102
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 280 SSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 173
SS+R +CC L+PA N A + A+I H
Sbjct: 62 SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,537,270
Number of Sequences: 28952
Number of extensions: 246476
Number of successful extensions: 667
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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