Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_J02
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 90 5e-19
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 90 5e-19
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 90 5e-19
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 1.2
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 3.6
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 27 4.8
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 27 6.3
10_08_0178 - 15475614-15475850,15476716-15476808 26 8.4
09_04_0407 + 17345382-17345579,17345711-17346235 26 8.4
09_04_0320 - 16656620-16657243,16658198-16659106 26 8.4
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 90.2 bits (214), Expect = 5e-19
Identities = 39/62 (62%), Positives = 49/62 (79%)
Frame = +2
Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 361
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 362 TA 367
A
Sbjct: 84 LA 85
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 90.2 bits (214), Expect = 5e-19
Identities = 39/62 (62%), Positives = 49/62 (79%)
Frame = +2
Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 361
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 362 TA 367
A
Sbjct: 68 LA 69
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 90.2 bits (214), Expect = 5e-19
Identities = 40/59 (67%), Positives = 48/59 (81%)
Frame = +2
Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDK 358
LFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDK 83
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 203 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP 328
N +GQD + ++ +V+ Y I Q+ + +L RLK PP
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPP 394
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 226 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 333
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 166 EDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSA 321
ED + + E+ +L +W A S PF A P + V +SS A
Sbjct: 398 EDGRSKLTSESNQLTFWSDSQAGNGSSPFHHSAGGGMSPYYRDVVLSSSSKA 449
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 292 LLTLDANIFRPSHETG*ISGWL 227
LLT + N RPSH + GW+
Sbjct: 102 LLTKNPNFVRPSHRLNEVQGWV 123
>10_08_0178 - 15475614-15475850,15476716-15476808
Length = 109
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 260 WPKYIRIQRQKAVLQ-RRLKVPPPINQFTQTLDK 358
W Y + RQKAV + R++ PPP +T+ +
Sbjct: 4 WGAYTEVARQKAVGRGRKVAAPPPNFPLVKTMPR 37
>09_04_0407 + 17345382-17345579,17345711-17346235
Length = 240
Score = 26.2 bits (55), Expect = 8.4
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 175 KPSIREENKELCYWP--GHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQP 336
K S+ EE K G A+ S F ++ +S S+G ASS AA + P
Sbjct: 113 KESVTEEEKTTGKEEEVGGDADDESEAFFSVKSFFSRSTSRGATVASSAFAAVDPP 168
>09_04_0320 - 16656620-16657243,16658198-16659106
Length = 510
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 256 AMAEIYSHPASKGCVTASSQSAAANQPVHPD 348
AMAE+ HPA+ A + A +P HPD
Sbjct: 320 AMAELLRHPAAMSRARAELRDALGAKP-HPD 349
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,641,757
Number of Sequences: 37544
Number of extensions: 173981
Number of successful extensions: 513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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