Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_J02
         (375 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   2e-21
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.40 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.40 
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)          27   6.5  
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)           27   6.5  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 42/59 (71%), Positives = 51/59 (86%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDK 358
           L EKR +NF IG DIQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+
Sbjct: 31  LIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDR 89


>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 118 EKSSGRSTCGEES*AQEDCKPSIREENKELCY 213
           EK  G  TCG+ES    DC P  +E   E CY
Sbjct: 94  EKKEGCYTCGDESHIARDC-PEKKESPGESCY 124


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = +1

Query: 112  DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 291
            DR+KS+GR++      A +  K S R E++ +   P      R     A  E  SH  S 
Sbjct: 978  DRQKSNGRNSRSVSPSAVKRTKGSKRSESRSVSRSPERDRKGRD---SAKKERQSHSESP 1034

Query: 292  GCVTASSQSAAANQPVH 342
              VT SS+     +P H
Sbjct: 1035 QRVTKSSKERPRKRPRH 1051


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 245 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDK 358
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKK 545


>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1652

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +3

Query: 153  KLSPRRL*TLYSRREQRTLLLARTSSQPEIYPVSCDGRNIFASSVKRLCYSVVSKCRRQS 332
            K SPR+  T  S +     + A  S    + P      NI A+S+K       S+    +
Sbjct: 954  KHSPRQNITATSLKSSAPKIAATFSRLSTVKP--SPKPNIAATSLKSSAVKPPSRLNNAA 1011

Query: 333  TSSPRH*IKPQPKV 374
            TSS  + +KP P++
Sbjct: 1012 TSSKSNTVKPTPRL 1025


>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
          Length = 769

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 233 TRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPP 328
           TRDL  F+   +YI I++    + RRL +P P
Sbjct: 29  TRDL-HFMNTEEYIMIRKAAKAIVRRLSLPSP 59


>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
          Length = 508

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 244 IPFRAMAEIYSHPA-SKGCVTASSQSAAANQPVHPD 348
           +P     +   HP  S GC T SS S  A  PV PD
Sbjct: 65  LPVVTTVDSTGHPQLSSGCSTNSSSSQTAPFPVIPD 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,765,783
Number of Sequences: 59808
Number of extensions: 185508
Number of successful extensions: 467
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)