Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I22
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58197| Best HMM Match : Ribosomal_L5_C (HMM E-Value=3)              28   3.4  
SB_58653| Best HMM Match : Ribosomal_L5_C (HMM E-Value=2.7)            27   7.7  
SB_42297| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_29614| Best HMM Match : Flavodoxin_1 (HMM E-Value=0.22)             27   7.7  
SB_24215| Best HMM Match : PSK (HMM E-Value=6.2)                       27   7.7  
SB_49594| Best HMM Match : Ribosomal_L5_C (HMM E-Value=2.6)            27   7.7  
SB_44579| Best HMM Match : Sialidase (HMM E-Value=8.3)                 27   7.7  
SB_9722| Best HMM Match : EGF_CA (HMM E-Value=2.4e-06)                 27   7.7  

>SB_58197| Best HMM Match : Ribosomal_L5_C (HMM E-Value=3)
          Length = 582

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 7   RVLYNYHLLIFNYLHYISFCQ 69
           R +YNY L + ++LH+I  CQ
Sbjct: 150 RTVYNYILALEDFLHFILICQ 170


>SB_58653| Best HMM Match : Ribosomal_L5_C (HMM E-Value=2.7)
          Length = 440

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 7   RVLYNYHLLIFNYLHYISFCQ 69
           R +YNY L + ++LH+I  CQ
Sbjct: 151 RTVYNYILALEDFLHFILNCQ 171


>SB_42297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 7   RVLYNYHLLIFNYLHYISFCQ 69
           R +YNY L + ++LH+I  CQ
Sbjct: 283 RTVYNYILALEDFLHFILNCQ 303


>SB_29614| Best HMM Match : Flavodoxin_1 (HMM E-Value=0.22)
          Length = 726

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 7   RVLYNYHLLIFNYLHYISFCQ 69
           R +YNY L + ++LH+I  CQ
Sbjct: 342 RTVYNYILALEDFLHFILNCQ 362


>SB_24215| Best HMM Match : PSK (HMM E-Value=6.2)
          Length = 254

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 7   RVLYNYHLLIFNYLHYISFCQ 69
           R +YNY L + ++LH+I  CQ
Sbjct: 151 RTVYNYILALEDFLHFILNCQ 171


>SB_49594| Best HMM Match : Ribosomal_L5_C (HMM E-Value=2.6)
          Length = 383

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 7   RVLYNYHLLIFNYLHYISFCQ 69
           R +YNY L + ++LH+I  CQ
Sbjct: 151 RTVYNYILALEDFLHFILNCQ 171


>SB_44579| Best HMM Match : Sialidase (HMM E-Value=8.3)
          Length = 172

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 197 IVLVSLPIP*K*NPKKMSMVIYLQVPILLV*FTGFTYTY 81
           ++L+SL IP +   KK   + Y  +P       GFTY Y
Sbjct: 56  LLLLSLEIPERGTGKKYGALTYSNLPTKTWHHVGFTYDY 94


>SB_9722| Best HMM Match : EGF_CA (HMM E-Value=2.4e-06)
          Length = 673

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 7   RVLYNYHLLIFNYLHYISFCQ 69
           R +YNY L + ++LH+I  CQ
Sbjct: 151 RTVYNYILALEDFLHFILNCQ 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,947,586
Number of Sequences: 59808
Number of extensions: 114736
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)