Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I21
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.9  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.9  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   5.9  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   7.7  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 156  MLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLD 269
            M+ +D EP +S C  LL  +     D + MVS  E  +
Sbjct: 1281 MVESDYEPDVSLCPELLSLAIDFPGDPFVMVSKMEKYE 1318


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 399 PIKDCTSVDLQCRHHLPLSR 340
           P K+C +  L+C +H+P SR
Sbjct: 46  PCKNCKAGKLECTYHMPSSR 65


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 408 QARTAFTNSALLLAEQYGFDGIDLSWQLPK 497
           Q  T F  S+L +A   G+D I L W L K
Sbjct: 531 QGVTEFVPSSLGVALAKGYDEIGLEWSLTK 560


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 185  KSRLQVRRQHTCLRFSDIALAVIVAEDF 102
            K RLQ R  +   +FS + LAV+ A+ F
Sbjct: 1055 KKRLQKRLGYNDTQFSKVKLAVLQAQSF 1082


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,000
Number of Sequences: 5004
Number of extensions: 40498
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)