Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I20
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203     29   2.4  
10_07_0193 - 13954819-13954950,13955340-13955375                       29   3.1  
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828...    28   4.1  
11_06_0126 - 20378611-20379719,20380081-20381239                       28   5.5  
05_07_0291 - 29020032-29020660,29020747-29020817,29021020-290211...    28   5.5  
01_06_1466 + 37559600-37559795,37560597-37560730,37561252-375614...    28   5.5  
02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757     27   7.2  

>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
          Length = 357

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 62  KNILEKGFDTTGTGFKSIE--SWWYKSRLGFP 151
           +NI   GF+   +  +SIE  S+WY SRL +P
Sbjct: 230 RNIANGGFNYVKSNERSIEFYSFWYSSRLRYP 261


>10_07_0193 - 13954819-13954950,13955340-13955375
          Length = 55

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 192 GKPPRVPRGNRSLCGKPRRLLYH 124
           G+ PR+PR    LC  P R +YH
Sbjct: 19  GRLPRLPRHQEFLCFHPHRRVYH 41


>01_06_0905 +
           32880368-32880633,32882439-32882568,32882704-32882894,
           32883625-32883852,32884062-32884224,32884343-32884416,
           32884484-32884601,32884722-32884788,32885152-32885223,
           32885350-32885513
          Length = 490

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 273 LAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 178
           +A +VD  ++G   P + G+  T +  G PP+
Sbjct: 71  VAGVVDFPVEGSANPFMVGLYFTRVKLGSPPK 102


>11_06_0126 - 20378611-20379719,20380081-20381239
          Length = 755

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = -1

Query: 339 ISLSKGNPRGIVSKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPRVPRGNR 160
           + LS+ N  G +   TL   +YL+ + D+S +  +  + +G  +  ++  + P +  GN 
Sbjct: 644 LELSRNNLSGEIPS-TLSNLSYLSNL-DLSYNNLSGTIPSGSQLGTLYM-EHPDMYNGNN 700

Query: 159 SLCGKPRR 136
            LCG P R
Sbjct: 701 GLCGPPLR 708


>05_07_0291 -
           29020032-29020660,29020747-29020817,29021020-29021194,
           29021451-29021571,29021686-29022036
          Length = 448

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 258 DISIDGKTIPVLTGVTMTNIW 196
           D S D   +PV+ GVT+ N+W
Sbjct: 360 DASYDPSKLPVVDGVTIKNVW 380


>01_06_1466 +
           37559600-37559795,37560597-37560730,37561252-37561437,
           37562538-37562753,37563008-37563119,37563493-37563663,
           37564621-37564684,37565555-37565685,37566263-37566393,
           37566843-37566945,37567322-37567398,37567813-37567860,
           37568162-37568311,37568810-37569010
          Length = 639

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 399 FLYTCTSVNFMLFVKKVGI*ISLSKGNPRGIVSKHTLHRQAYLAFIVDISIDGKTI 232
           ++   T  NF  FVK  GI      G+PR +    T ++   LA   +IS+  K +
Sbjct: 249 YVRLATHANFRTFVKSAGIDFYPLGGDPRILAQYMTKNKGFCLAGPTEISVQRKQL 304


>02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757
          Length = 397

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 211 DDEHLERQTAEGSER*QKPVRKAKATLIPPTLDALETCSS 92
           D ++ E+    G  R +KPV  + AT  PP+  A    S+
Sbjct: 113 DSKYCEKHMHRGKNRSRKPVEMSLATPPPPSSSATSAASN 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,427,978
Number of Sequences: 37544
Number of extensions: 302012
Number of successful extensions: 737
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)