Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I20
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)                     31   0.60 
SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_59063| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)                   28   5.6  
SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3)            27   7.4  
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_25545| Best HMM Match : ABC_tran (HMM E-Value=0.00042)              27   9.8  
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   9.8  

>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 366

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 22/71 (30%), Positives = 36/71 (50%)
 Frame = -1

Query: 294 TLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPRVPRGNRSLCGKPRRLLYHQLS 115
           T+   AYL+    + + GK + +LTG  +T    GKP  +     +L GKP  L    ++
Sbjct: 55  TIEASAYLSVRGIVRLPGKPV-ILTGEQVT--LTGKPVTLTGKPVTLTGKPVTLAGKPVT 111

Query: 114 MLLKPVPVVSK 82
           ++ KPV +  K
Sbjct: 112 LMGKPVSLTGK 122


>SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 400 LSVYLHVGKLHVVCEESRHINFPIEGES*GHCVETYTPPTSVSRLHSRHI 251
           ++ YL++ ++  + ++ RHI   + G++ G  V  +    SV R H + I
Sbjct: 105 VAAYLNIPEIIRIAKKPRHIEVQVMGDNYGDVVHLFERDCSVQRRHQKVI 154


>SB_59063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 9   SSAARS-RCTALSNRDRGLKTYWKKVS 86
           S A+R+ RC  +S  D  L+TYW+KV+
Sbjct: 238 SQASRADRCLPVSRSDSILETYWRKVN 264


>SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)
          Length = 649

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 75  KKVSTQLEQVSRASRVGGIRVALAFRTGFCY 167
           KK+ST+   + RAS V  +++   F TG CY
Sbjct: 613 KKMSTRSMGLKRASSVKYVQLLYLFNTGKCY 643


>SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3)
          Length = 110

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 192 GKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSKPFSNMF 64
           GKPPR P+   SL     +   H + +  KP+P+ +    N F
Sbjct: 65  GKPPRKPQKTASLKEVLEKFSNHNVIIAPKPMPIETDVNGNDF 107


>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 192 GKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSKPFSNMF 64
           GKPPR P+   SL     +   H + +  KP+P+ +    N F
Sbjct: 800 GKPPRKPQKTASLKEVLEKFSNHNVIIAPKPMPIETDVNGNDF 842


>SB_25545| Best HMM Match : ABC_tran (HMM E-Value=0.00042)
          Length = 146

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -1

Query: 492 MSESKYVRSSFFITISDMSISLMVLDIVDKSFLYTCTSVNFMLFVKKVGI 343
           +S   +V +S    ++ +S  +  L  V  S  +  +S++F  F+K VG+
Sbjct: 38  VSSLSFVVNSLSFIVNSLSFVVSSLSFVVNSLSFVVSSLSFWSFLKDVGL 87


>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -1

Query: 492 MSESKYVRSSFFITISDMSISLMVLDIVDKSFLYTCTSVNFMLFVKKVGI 343
           +S   +V +S    ++ +S  +  L  V  S  +  +S++F  F+K VG+
Sbjct: 383 VSSLSFVVNSLSFIVNSLSFVVSSLSFVVNSLSFVVSSLSFWSFLKDVGL 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,892,502
Number of Sequences: 59808
Number of extensions: 353150
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)