Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I20
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36670.2 68415.m04498 aspartyl protease family protein contai...    30   1.1  
At2g05645.1 68415.m00604 hypothetical protein                          30   1.1  
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote...    29   1.5  
At3g02740.1 68416.m00266 aspartyl protease family protein contai...    29   1.5  
At1g08210.1 68414.m00907 aspartyl protease family protein contai...    29   1.5  
At1g48690.1 68414.m05449 auxin-responsive GH3 family protein sim...    28   3.5  
At4g21240.1 68417.m03071 F-box family protein contains F-box dom...    28   4.6  
At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit...    28   4.6  
At5g22850.1 68418.m02671 aspartyl protease family protein contai...    27   6.1  
At3g28850.1 68416.m03599 glutaredoxin family protein                   27   6.1  
At1g72800.1 68414.m08416 nuM1-related contains similarity with n...    27   6.1  
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ...    27   6.1  

>At2g36670.2 68415.m04498 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 507

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 285 RQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPP 181
           RQ+ +  +VD  + G + P L G+  T +  G PP
Sbjct: 76  RQSSVGGVVDFPVQGSSDPYLVGLYFTKVKLGSPP 110


>At2g05645.1 68415.m00604 hypothetical protein
          Length = 204

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 126 HQLSMLLKPVPVVSKPFSNMFLVHG 52
           H+  +LL P P++S P S+MF+ HG
Sbjct: 130 HRPFVLLMPRPLLSSPHSHMFVEHG 154


>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase TMKL1, Arabidopsis
           thaliana, PID:E353150
          Length = 757

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = -1

Query: 261 VDISIDGKTIPVLTGVTMTNIWRGKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSK 82
           VD+S +  T P+ + +++ N    +      GN+ LCGKP ++L    S L  P P +S+
Sbjct: 249 VDLSFNNLTGPIPSSLSLLN----QKAESFSGNQELCGKPLKILCSIPSTLSNP-PNISE 303

Query: 81  PFS 73
             S
Sbjct: 304 TTS 306


>At3g02740.1 68416.m00266 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 488

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 312 GIVSKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 178
           G +  H +HR + L   +DI + G + P   G+    I  G P R
Sbjct: 52  GALRAHDVHRHSRLLSAIDIPLGGDSQPESIGLYFAKIGLGTPSR 96


>At1g08210.1 68414.m00907 aspartyl protease family protein contains
           Pfam profile PF00026: Eukaryotic aspartyl protease;
           similar to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) {Nicotiana tabacum}
          Length = 492

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 303 SKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 178
           ++H    Q+ +  +V+  +DG + P L G+  T +  G PPR
Sbjct: 54  ARHGRLLQSPVGGVVNFPVDGASDPFLVGLYYTKVKLGTPPR 95


>At1g48690.1 68414.m05449 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 190

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 105 KPVPVVSKPFSNMFLVHGLCSIT 37
           K  PV +K F NM  +H LCS T
Sbjct: 99  KIFPVNNKYFENMIFIHALCSST 121


>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 417

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 229 RYGFTIN*YVYYEGEIRLSVECMF 300
           R G  IN +VYYE +IR  V+ +F
Sbjct: 227 RVGTCINGHVYYEAQIRFKVDDIF 250


>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 311

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 284 RWSVCFDTMPLGFPFDREIYMPTFFTNN 367
           +W+V  DT P+G  FD  I    +F  N
Sbjct: 163 QWAVVGDTFPVGCAFDESIVHHKYFKEN 190


>At5g22850.1 68418.m02671 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 493

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 273 LAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 178
           L  ++D  +DG   P + G+  T +  G PPR
Sbjct: 61  LGGVIDFPVDGTFDPFVVGLYYTKLRLGTPPR 92


>At3g28850.1 68416.m03599 glutaredoxin family protein 
          Length = 428

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 310 HCVETYTPPTSVSRLHSRH 254
           HC   Y+PP  V R HS H
Sbjct: 14  HCRRGYSPPVDVQRSHSVH 32


>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
           GI:1279563 from [Medicago sativa]
          Length = 335

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -3

Query: 211 DDEHLERQTAEGSER*QKPVRKAKATLIPP-TLDALETCS---SCVETFFQYVFSPRSLF 44
           DD +++  + + S   ++PV K  A+   P T D+L +     +  ++ F   F P SLF
Sbjct: 109 DDSYMDTSSEDESSSAEEPVNKPAASAAKPATKDSLFSAGFKPAAKDSLFSAGFKPDSLF 168

Query: 43  DNAVHLERAADD 8
             +   E AA D
Sbjct: 169 --SAGFEPAAKD 178


>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -1

Query: 192 GKPPRVPRGNRSLCGKP--RRLLYH 124
           GKPP    GN SLCGK     + YH
Sbjct: 186 GKPPAYTDGNCSLCGKKIFDEMFYH 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,568,585
Number of Sequences: 28952
Number of extensions: 242510
Number of successful extensions: 597
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)