Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I19
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0675 - 19379716-19380285,19380380-19380571,19381742-19381975     29   3.0  
07_03_1675 - 28576945-28576966,28577286-28577440                       28   6.9  
01_06_0945 + 33217310-33217427,33218820-33219433                       28   6.9  
05_05_0065 - 22069798-22069890,22070878-22071160,22071240-220713...    27   9.2  
03_05_0336 - 23265283-23265462,23266023-23266118,23266571-23267020     27   9.2  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    27   9.2  
01_01_0743 - 5763654-5766902                                           27   9.2  

>09_04_0675 - 19379716-19380285,19380380-19380571,19381742-19381975
          Length = 331

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 521 VGRGVETTSRPSGTRNKQATAPRADVPDELINSPPQSPS*YD 396
           VG GV+ +  P+  R   A  PR   P   +N  P +P+ +D
Sbjct: 218 VGGGVDPSYDPAYARQLMAACPRDVAPTIAVNMDPITPAAFD 259


>07_03_1675 - 28576945-28576966,28577286-28577440
          Length = 58

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 427 LISSSGTSARGAVACLFRVPEGREVVSTPRPTVFFLIRYS 546
           L + S T+  GAV  L   P G  V+ T     +FL+RY+
Sbjct: 15  LATRSCTARHGAVRELSSDPRGAAVMQTMTDRTWFLVRYN 54


>01_06_0945 + 33217310-33217427,33218820-33219433
          Length = 243

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 120 KRRLRRVRPSAPGARSVAGA 61
           +RRLRRV P+ P A S +GA
Sbjct: 219 RRRLRRVEPATPPAASPSGA 238


>05_05_0065 -
           22069798-22069890,22070878-22071160,22071240-22071335,
           22071456-22071558,22071633-22071693,22071816-22071887,
           22072315-22072383,22072459-22072482,22073278-22073316,
           22073862-22073951,22074063-22074095
          Length = 320

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 361 YPKHFITSYFNIFTE 317
           Y KHF+TS+  IFTE
Sbjct: 228 YGKHFVTSFVEIFTE 242


>03_05_0336 - 23265283-23265462,23266023-23266118,23266571-23267020
          Length = 241

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 38  LVAPCVRAAPATLRAPGAEGRTRRSLRFGE 127
           L A C   AP+  R+  AEGR RR  R  E
Sbjct: 54  LAARCRATAPSWARSAAAEGRWRRQQRRSE 83


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 400 YYEGDWGGELISSSGTSARGAVACL--FRVPEGRE 498
           Y+E D  G+L+        G VACL    VPEGR+
Sbjct: 579 YFEMDMTGQLMEVEKQDMSGDVACLAIAPVPEGRQ 613


>01_01_0743 - 5763654-5766902
          Length = 1082

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 518 GRGVETTSRPSGTRNKQATAPRADV 444
           G  +E  S P G +N ++ APR DV
Sbjct: 40  GHILEAASAPRGAKNSRSRAPRTDV 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,329,532
Number of Sequences: 37544
Number of extensions: 234691
Number of successful extensions: 758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)