Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I19
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39171| Best HMM Match : EzrA (HMM E-Value=0.16)                     29   4.1  
SB_31348| Best HMM Match : ERM (HMM E-Value=0)                         29   4.1  
SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_39171| Best HMM Match : EzrA (HMM E-Value=0.16)
          Length = 587

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/53 (32%), Positives = 31/53 (58%)
 Frame = +1

Query: 430 ISSSGTSARGAVACLFRVPEGREVVSTPRPTVFFLIRYSIYFIPCERILRCDV 588
           ++SSGT  +GA A  F   +GR +V  P  +   ++R ++  +P +R+L C +
Sbjct: 151 VTSSGTRLKGATANFFGQFDGR-IVDLPISSPAPVMRQTV--LPFKRLLLCPI 200


>SB_31348| Best HMM Match : ERM (HMM E-Value=0)
          Length = 665

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 585 ITSQNAFARNKIYRITY*KKNSRSRGRNNLTTLRHAEQTGNXXXXXXXXRTNQLPS 418
           I  + A   ++++R  +  + S +RGR NL   +H E+            +N LPS
Sbjct: 238 ILERRAREADELFRRVF--QESEARGRENLLNAKHTEKKAVQKLAELSSSSNNLPS 291


>SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 506 ETTSRPSGTRNKQATAPRADVPDELINSPPQSPS 405
           E  SR      ++++AP  D+PD  +  PP + S
Sbjct: 161 EPLSREGSPTAEESSAPPTDIPDATLTPPPNTQS 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,082,538
Number of Sequences: 59808
Number of extensions: 256161
Number of successful extensions: 783
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)