Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I19
         (624 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated...    31   3.3  
AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein pr...    31   3.3  
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ...    31   3.3  
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc...    31   3.3  
AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein.                 31   3.3  
AB023146-1|BAA76773.1| 1663|Homo sapiens KIAA0929 protein protein.     31   3.3  

>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
            repressor protein (SHARP) protein.
          Length = 3664

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 587  TSHRKMRSQGIKYIE*RIKKKTVGRGVETTSRPSGTRNKQATAP-RADVPD 438
            TSH    ++G K +E  + +K  GR   T SR     NK+  AP  + VP+
Sbjct: 2308 TSHSVPEAKGSKEVEVTLVRKDKGRQKTTRSRRKRNTNKKVVAPVESHVPE 2358


>AL096858-1|CAB51072.1| 3261|Homo sapiens hypothetical protein
            protein.
          Length = 3261

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 587  TSHRKMRSQGIKYIE*RIKKKTVGRGVETTSRPSGTRNKQATAP-RADVPD 438
            TSH    ++G K +E  + +K  GR   T SR     NK+  AP  + VP+
Sbjct: 1905 TSHSVPEAKGSKEVEVTLVRKDKGRQKTTRSRRKRNTNKKVVAPVESHVPE 1955


>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
            repressor protein (SHARP) protein.
          Length = 3664

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 587  TSHRKMRSQGIKYIE*RIKKKTVGRGVETTSRPSGTRNKQATAP-RADVPD 438
            TSH    ++G K +E  + +K  GR   T SR     NK+  AP  + VP+
Sbjct: 2308 TSHSVPEAKGSKEVEVTLVRKDKGRQKTTRSRRKRNTNKKVVAPVESHVPE 2358


>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
            transcription cofactor protein.
          Length = 3664

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 587  TSHRKMRSQGIKYIE*RIKKKTVGRGVETTSRPSGTRNKQATAP-RADVPD 438
            TSH    ++G K +E  + +K  GR   T SR     NK+  AP  + VP+
Sbjct: 2308 TSHSVPEAKGSKEVEVTLVRKDKGRQKTTRSRRKRNTNKKVVAPVESHVPE 2358


>AF006514-1|AAB87382.1| 1739|Homo sapiens CHD2 protein.
          Length = 1739

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 586  HHIAKCVRKE*NISNNVLKKKQSVAGSKQPHDPPARGTNRQPL 458
            H + K   K+ +      KKK  V G K+P  P A G++R  L
Sbjct: 1549 HKLYKMAHKKRSQEEEEQKKKDDVTGGKKPFRPEASGSSRDSL 1591


>AB023146-1|BAA76773.1| 1663|Homo sapiens KIAA0929 protein protein.
          Length = 1663

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 587 TSHRKMRSQGIKYIE*RIKKKTVGRGVETTSRPSGTRNKQATAP-RADVPD 438
           TSH    ++G K +E  + +K  GR   T SR     NK+  AP  + VP+
Sbjct: 307 TSHSVPEAKGSKEVEVTLVRKDKGRQKTTRSRRKRNTNKKVVAPVESHVPE 357


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,251,897
Number of Sequences: 237096
Number of extensions: 1214828
Number of successful extensions: 3215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3213
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)