Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I19
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51250.1 68418.m06354 kelch repeat-containing F-box family pr...    29   3.3  
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   5.8  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   5.8  
At1g10300.1 68414.m01160 GTP-binding protein-related contains si...    28   5.8  

>At5g51250.1 68418.m06354 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 368

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 592 NTHHIAKCVRKE*NISNNVLKKKQS----VAGSKQPHDPPA 482
           NTH    C + +  ++N+  KKK+S    +A    PH PPA
Sbjct: 65  NTHWFTLCRKPDGTLTNDTSKKKKSNGYVLATVPIPHSPPA 105


>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 400 YYEGDWGGELISSSGTSARGAVACL--FRVPEGRE 498
           Y+E D  G+L+        G VACL    VPEGR+
Sbjct: 563 YFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRK 597


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 400 YYEGDWGGELISSSGTSARGAVACL--FRVPEGRE 498
           Y+E D  G+L+        G VACL    VPEGR+
Sbjct: 563 YFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRK 597


>At1g10300.1 68414.m01160 GTP-binding protein-related contains
           similarity to nucleolar GTP-binding protein 1 SP: Q9BZE4
           from [Homo sapiens];
          Length = 687

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 350 MFRIVCLPLCLCFAVCRITRGIGEGS*LVRQERRRAERLP 469
           ++R  CL +     +C + +GIG     + Q R+   RLP
Sbjct: 152 LYRCKCLKVAALGRMCTVMKGIGPSLAYLEQVRQHIARLP 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,050,213
Number of Sequences: 28952
Number of extensions: 167506
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)