Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I18
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20776| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   6.8  
SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)                 27   6.8  
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 27   6.8  
SB_44915| Best HMM Match : VWA (HMM E-Value=0)                         27   9.0  
SB_44531| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)                   27   9.0  
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)                  27   9.0  
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         27   9.0  

>SB_20776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +3

Query: 99  NPDY-NPGQVHVVDNSGVP-SDG-NSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFV 266
           NP+Y NPG  + + +     S G  + H  I NP P++        G  +P  TGP  +
Sbjct: 20  NPEYKNPGNKNGIRHPREENSHGIRNSHTRIRNPKPYWKTCHGAIRGIQQPDCTGPEMI 78


>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 55   YWPW--LPQTECTWSIITLIIIQARFTWWTIVVFHRTAIV 168
            YW W  L  + C+W+ I L  ++      T++ +H+   V
Sbjct: 1296 YWSWVELVLSGCSWTSIVLYFVRFGINKSTVLTYHKDTSV 1335


>SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)
          Length = 261

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 84  HVVDHNPDYNPGQVHVVDNSGVPS 155
           +V+D NP ++P ++H+ D  GVPS
Sbjct: 183 NVLDLNPSFHPAEIHLRD-IGVPS 205


>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -1

Query: 360 FKIAYLY--ETFTSHHGREGCRI-AWVD 286
           F++A L   E + SH GREGC+   WVD
Sbjct: 75  FRLAQLLNEENWPSHLGREGCQFWIWVD 102


>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
          Length = 541

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 177 VIANPDPFFSQP-SNGPSGNYEPISTG 254
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 258 VIAEPDPCLSKPCANG--GTCSPISSG 282


>SB_44531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 22/78 (28%), Positives = 30/78 (38%)
 Frame = +3

Query: 75  NRVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTG 254
           NRVH+ D  PD +  Q H        +   S  +   +P+P  S P  GP      + T 
Sbjct: 211 NRVHLRDTQPDLSAAQDHSAPEPSHDAT-KSSGMSTCSPEPEPSGP--GPLVATTTVLTE 267

Query: 255 PAFVDFNHPNYPPKRYDN 308
           P          PP+R  N
Sbjct: 268 PVVTRSGRVVKPPQRLIN 285


>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
          Length = 318

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 177 VIANPDPFFSQP-SNGPSGNYEPISTG 254
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 54  VIAEPDPCLSKPCANG--GTCSPISSG 78


>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
          Length = 228

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 114 PGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQ 209
           P     VD+SGV  D  S  +V A  +P FSQ
Sbjct: 155 PLHSEAVDSSGVAGDQRSSLLVSATLNPLFSQ 186


>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 114 PGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQ 209
           P     VD+SGV  D  S  +V A  +P FSQ
Sbjct: 84  PLHSEAVDSSGVAGDQRSSLLVSATLNPLFSQ 115


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 177 VIANPDPFFSQP-SNGPSGNYEPISTG 254
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 409 VIAEPDPCLSKPCANG--GTCSPISSG 433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,452,206
Number of Sequences: 59808
Number of extensions: 307682
Number of successful extensions: 821
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)