Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I17
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    32   0.056
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.39 
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    28   1.2  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    27   1.6  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   2.1  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    27   2.8  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   4.8  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    25   6.4  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 32.3 bits (70), Expect = 0.056
 Identities = 23/61 (37%), Positives = 31/61 (50%)
 Frame = -3

Query: 597 RSTQLRTAMHHHPPNQERAVNLSILPVSGPGEISRVESNKAAGSTPGGALPSIPLSFSFA 418
           R T LRT + HH P+QE +  LS    S P   S +  +K+  S+P G  PS+  S    
Sbjct: 124 RLTTLRTLL-HHLPSQEISTLLSSSLTSSPSN-SGLSLDKSLPSSPKGDSPSLSSSLPSL 181

Query: 417 T 415
           T
Sbjct: 182 T 182


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = +1

Query: 124 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 276
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = -3

Query: 552 QERAVNLSILPVSGPGEISRVESNKAAGSTPGGALPSIPLSFSFATILPPESKIFGFPEA 373
           +   V L  LP+ G      VES     + P  ALP  PLSFS     P ++     PE+
Sbjct: 398 ENELVKLFFLPLDGD-----VESPHPTSTMPE-ALPREPLSFSLPEKAPEKATNISIPES 451

Query: 372 A 370
           A
Sbjct: 452 A 452


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 534 LSILPVSGPGEISRVESNKAAGSTPGGALPSIPLSFSFATIL 409
           +SIL V+GP +  R+  +   G T  G L  +  + SF  +L
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLLSLLTPANSFDEML 255


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 500 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPA 366
           FPVL QI+P  P L +  R F+  S+    SP++ +    R LP+
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKAKE--FDRPLPS 482


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 590 PN*ERPCTTTHRIKKELLICQSFRCPGLVRFPVLSQIKP 474
           P   +  T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 368 PRWAQAATAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 169 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 276
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
 Frame = +3

Query: 243 FAKGVFINQERKLEVRRRLDTA----LVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTPGG 410
           F  G+F+ +  K   +R +  A    L    NM             G  P     WT  G
Sbjct: 258 FNAGLFVFKPLKAHYKRLMALARFPKLYDNANMMEQSLLNFAYNSAGAFPWESLDWTFNG 317

Query: 411 VWLQS*NLKELTEGHHQEW 467
           +W +  +L  L   H + W
Sbjct: 318 LWARKNDLPYLKAVHGKHW 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,100
Number of Sequences: 5004
Number of extensions: 53252
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)