Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_I17
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0189 + 32214702-32215154 29 2.2
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 29 2.8
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217... 29 2.8
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 29 3.8
02_05_0841 + 32129863-32130294,32130395-32130459,32130565-321307... 28 5.0
12_02_0744 - 22704637-22705341 28 6.6
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 28 6.6
06_01_0112 - 876213-876857,877245-877622,877707-877813,878271-87... 27 8.7
>03_06_0189 + 32214702-32215154
Length = 150
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 477 AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAA 370
AA + P ALP +P + T LPP I P+AA
Sbjct: 30 AAAAAPPAALPVLPAVPALPTTLPPMPAIPAVPQAA 65
>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 410 SMVAKLKLKGIDGRAPPGVEPAALFDSTREISPGPDTGR--IDRLTALS*FGGWWCMAVL 583
S++ +L+L+ +D R PG+E AA I GP + I ++++ G + C
Sbjct: 915 SLIPQLQLQTLDVRCSPGIEWAANGPVQPFIQAGPSKPKPLIHGISSMEAMGKYRCGVPC 974
Query: 584 SW 589
SW
Sbjct: 975 SW 976
>02_04_0451 +
23021139-23021269,23021366-23021498,23021594-23021789,
23023376-23023737,23024049-23024363
Length = 378
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 561 PPNQERAVNLSILPVSGPGEISRVESNKAAGSTPGGALPSIPLSFSF 421
PP + N +ILP PG S + S G TP G + P F F
Sbjct: 327 PPRTFSSEN-AILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFF 372
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = +2
Query: 206 FLDRRKTNISESICQRCFHQSRTKVRGSKAIRY-RPSSNRKYVI*RSADVTTMARRAASG 382
+++ N SIC RC H S K + K Y + ++ + + A
Sbjct: 561 YVEVENGNDKSSICGRCHHLSSAKAKYQKRFSYAETDAEAEWWVQCDKCKAWQHQICALF 620
Query: 383 KPKILDSGGSMV-AKLKLKGIDGRAPPGVEPAALFDSTREI 502
PKI+D AK LK D +EP+ + RE+
Sbjct: 621 NPKIVDPEAEYTCAKCFLKEKDNEDVDSLEPSTIL-GAREL 660
>02_05_0841 +
32129863-32130294,32130395-32130459,32130565-32130774,
32130943-32131024
Length = 262
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -3
Query: 510 PGEISRVESNKAAGSTPGGALPS-IPLSFSFAT--ILPPESKIFGFPEAARRA 361
PGE+S +ES+ A G LPS S AT +PP ++I F AA A
Sbjct: 176 PGEVSDLESDLAGGQKRSRPLPSAATASAQQATRPKIPPAAEIEAFFAAAEEA 228
>12_02_0744 - 22704637-22705341
Length = 234
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 449 RAPPGVEPAALFDSTREISPGPDTGR 526
R PP PA S+R +SP P +GR
Sbjct: 96 RRPPRSSPAPTSSSSRGVSPPPTSGR 121
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -3
Query: 510 PGEISRV-ESNKAAGSTPGGALPSIPLSFSFATILPPESKIFGFPEAARRAIVVTSA 343
PG R+ S S+P A P PL T++PP + FP RR + SA
Sbjct: 8 PGSFHRLLASRHYPPSSP--APPPRPLLLLPKTLIPPAAAAMEFPRRGRRDVAAASA 62
>06_01_0112 -
876213-876857,877245-877622,877707-877813,878271-878319,
880413-880637,880741-880935
Length = 532
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 528 ILPVSGPGEISRVESNKAAGSTPGGALPSIPLSFSFATILPPESKIFGF 382
I+P+SG + ++++ + P ALP PL+ ATI FGF
Sbjct: 220 IVPLSGKSYVPDENNSESVDAKPEPALPFNPLAARAATISLSAFGPFGF 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,619,415
Number of Sequences: 37544
Number of extensions: 407038
Number of successful extensions: 1186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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