Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I17
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10890.1 68417.m01772 expressed protein                             29   3.1  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    28   5.4  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   7.2  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           27   7.2  
At4g01810.1 68417.m00238 protein transport protein-related relat...    27   9.5  
At3g52440.1 68416.m05767 Dof-type zinc finger domain-containing ...    27   9.5  
At2g35820.1 68415.m04398 expressed protein                             27   9.5  
At2g11620.1 68415.m01249 hypothetical protein                          27   9.5  

>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 218 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYVI 334
           ++T I   +C RC+H S R K+R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 424 LCNHTPPGVQNLWFPGSCPP 365
           +C   PP  + LWFPGS PP
Sbjct: 57  VCEPLPPD-RPLWFPGSSPP 75


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 255 HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 121
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 273 RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPG 383
           RK+  R   D   V  V +   DP   L W+ GQ+PG
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPG 270


>At4g01810.1 68417.m00238 protein transport protein-related related
           to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
          Length = 880

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 347 DVTTMARRAASGKPKILDSGGSMVAKLKLKGIDGRAPPGVEPAALFDSTREISPGP 514
           DV  M    A+  P +L S   ++ + KL  +   A  G    A+  + REISPGP
Sbjct: 144 DVVRMEEPIAADSPYVLFSANKVLKQKKLANV---ASLGF--GAIVSAGREISPGP 194


>At3g52440.1 68416.m05767 Dof-type zinc finger domain-containing
           protein DNA binding protein - Hordeum
           vulgare,PID:e1334094
          Length = 247

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 522 PVSGPGEISRVESNKAAGSTPGGALPSIPLSFSFATILPPE 400
           P S  G  ++      +G+ PGG  PSI L+  +A  L P+
Sbjct: 80  PKSSSGNNTKTSLTANSGN-PGGGSPSIDLALVYANFLNPK 119


>At2g35820.1 68415.m04398 expressed protein
          Length = 192

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 383 KPKILDSG--GSMVAKLKLKGIDGRAPPGVEPAALF 484
           KP +++ G  G MV KLK +     APP VE   +F
Sbjct: 91  KPTLIEDGDDGKMVDKLKSRSGHLYAPPAVEEIRVF 126


>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 409 PPGVQNLWFPGSCPPSHCSNVGGS 338
           PPG  + WFP S P   C+N G S
Sbjct: 105 PPGANDHWFPYSDPA--CTNSGAS 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,222,533
Number of Sequences: 28952
Number of extensions: 301521
Number of successful extensions: 794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)