Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_I16
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0922 + 20834195-20836603 31 0.93
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 29 2.2
04_03_0916 + 20794240-20794246,20794585-20796545 29 2.2
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 29 3.8
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 29 3.8
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 28 5.0
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 28 6.6
05_06_0268 + 26792845-26792891,26793050-26793830 28 6.6
04_03_0913 + 20777859-20780309 28 6.6
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220... 28 6.6
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420... 27 8.7
11_04_0009 - 12132781-12133272 27 8.7
09_03_0172 - 13072575-13073800,13075919-13076054 27 8.7
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 27 8.7
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 27 8.7
>04_03_0922 + 20834195-20836603
Length = 802
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 401 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 532
QP+ QC P + +EL C+C G ++ +DW + DR
Sbjct: 290 QPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWELDDR 334
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 506 LEHVVHSGTDSVEVRNLRNIWQVFSGECFGTEIVVVVME 390
LE + HSG + +V L N W ++ F + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 401 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 532
QP+ QC P + +EL +C C G + +DW + DR
Sbjct: 135 QPKAQCDVYSICGPFTVCTDNELPNCNCIKGFTITSLEDWVLEDR 179
>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 39 LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKV 200
L G+ SR V P + ++ Y D+ EQW R R + L ++ + + G+ +V
Sbjct: 886 LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 37 FWSASTA-GTCSLKSLVTTLNNMRISRSSGPT 129
FW ST CS L+ LNN +SR +GP+
Sbjct: 40 FWPRSTKWALCSEVDLIGPLNNWTLSRLTGPS 71
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 144 AGAPWSWPTAPADPHIVQCSNQALQRARTG 55
AG PW+W +PA + +C A +R TG
Sbjct: 408 AGGPWTWRESPASRAMQKC--PACKRTHTG 435
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 128 LQGAPASGCTNCQLRRHLRCYGQGTYN 208
L G P G N + +LRCYG +Y+
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYGSLSYH 328
>05_06_0268 + 26792845-26792891,26793050-26793830
Length = 275
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1
Query: 421 KHSPLKTCQIFLKFRTSTLS---VPEWTTCSRTRLVHLRPPLTP-MSLIVMTTLWGGKLN 588
KH ++TC + + + + + +P+W ++ + +PP TP ++ + G LN
Sbjct: 98 KHRAIRTCLLTVAYHSPSSEPSVIPDWDCSKQSTVNPAQPPFTPSIACPSLVEATSGTLN 157
Query: 589 LF 594
F
Sbjct: 158 QF 159
>04_03_0913 + 20777859-20780309
Length = 816
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 401 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 532
QP+ C P +EL HC C G V +DW + DR
Sbjct: 288 QPKAPCDVYAICGPFTVCIDNELPHCNCIKGFTVTSLEDWELEDR 332
>03_02_0798 -
11321590-11321685,11321802-11321888,11321972-11322082,
11322169-11322515,11322570-11322612,11322669-11322749,
11323321-11323596,11325277-11325552
Length = 438
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 150 PLAGAPWSWPTAPADPHIVQCSNQALQR 67
PL+GAP P AP P + C AL +
Sbjct: 15 PLSGAPRRRPAAPTRPSALVCGTYALTK 42
>12_02_0244 -
16241243-16241279,16241781-16241848,16241930-16242032,
16242095-16242256,16242305-16242369,16242547-16242612,
16242738-16242829,16243029-16243134,16243231-16243279,
16243387-16243540,16243661-16243687,16243797-16243959,
16244621-16244701
Length = 390
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -2
Query: 524 RCTNLVLEHVVHSGTDSVEVRN--LRNIWQVFSGECF 420
R NLV+++V HSG + +++ LRN+ FS CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390
>11_04_0009 - 12132781-12133272
Length = 163
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 453 PQVPNFNTVGAGVDYMFKDKIGASATAAHTDVFNRNDYSLGGKTE 587
P V +F+ G GVD M + + A+A++A D+S GG E
Sbjct: 19 PPVADFD--GEGVDGMAPEAVNATASSARLGAVASGDWSGGGGGE 61
>09_03_0172 - 13072575-13073800,13075919-13076054
Length = 453
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 572 QRVVITIKDIGVSGGRRCTNLVLEHVV 492
+ V++T+KD+ GGR CT L E +
Sbjct: 281 RNVILTMKDLTAVGGRFCTYLSKEKAI 307
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 147 AGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 320
AG + + G V + G +NH +S +G GA TAG AY+ +N G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -3
Query: 313 PFTLS*ANPAVAAPNFIWLVRSTEPRALSL*FSF-PVIGTLTIAPEVPSELTVSAPACRR 137
P TL +PA AA + IW +P + SF P + APE P L + A R
Sbjct: 426 PKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSR 485
Query: 136 T 134
+
Sbjct: 486 S 486
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,091,897
Number of Sequences: 37544
Number of extensions: 400882
Number of successful extensions: 1056
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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