Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I16
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              30   1.6  
SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  28   6.6  
SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)                 27   8.8  

>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +3

Query: 102 EDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAA 281
           +++P       V+ +    T+N    +   +K  + GN +  L A  S    N  K G  
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707

Query: 282 TAGLAY-DNVNGHGATLT-KTHIPGFGDKMTAAGKVN 386
              ++Y DN+N   A  T +  IPG   K  +  KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 318 GATLTKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQ-VPNFNTVGAG 488
           G+T   T IPG G    + GK ++  N  H  S  A         P  VP   T GAG
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379


>SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 43  SASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL*LETKI 222
           SA+TA   S+   + TL    +S ++GPTP  + ++   L+ + +   L      + + +
Sbjct: 113 SATTAQDSSVLDTLATLATATLSHNTGPTPSTSMQQATSLAGRISVTPLTLSQNTISSSL 172

Query: 223 TG-SVPLAP 246
           +G S PL P
Sbjct: 173 SGLSTPLTP 181


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 351 FGDKMTAAGKVNLFH---NDNHDFSAKAFATKNLPNIPQVPNFNTV 479
           FGDK   A  +  FH   ND  D S  +  T+ + ++  +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632


>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 61  TCSLKSLVTTLNNMRISRSSGPTPGC 138
           T + K+++TTL  MRI  ++GP   C
Sbjct: 654 TTTKKTIITTLTTMRICAANGPLIDC 679


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +3

Query: 183 GAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDK 362
           G  V   +T  E  +L ALG   +T+ +     T  L++ N +   A+  K+ I   G  
Sbjct: 401 GIYVGGAVTAMEEDQLVALG---VTHVLNAAQGTKRLSHVNTD---ASFYKSGIIFHGIP 454

Query: 363 MTAAG--KVNLFHNDNHDFSAKAFATKNLP 446
            T     K+N + ++  DF A A  TKN P
Sbjct: 455 ATDVFMFKLNKYFDEAADFIASAVGTKNCP 484


>SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +2

Query: 134 GAPASGCTNCQLRRHLRCYGQGTYNWKRKS 223
           G PA    N QL R  RC    TY W RKS
Sbjct: 73  GKPAYFAKNLQLDRK-RCLYPKTYTWDRKS 101


>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
          Length = 1336

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +3

Query: 54   SRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLS 233
            +R   + EP   ++  EDQ E  A+S +R +AG     +D   G + +   T N NH   
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239

Query: 234  ALGSVDLTNQMKLGAATAGLAYDNVNG 314
             +      + +K G        D++ G
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKG 1265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,309,052
Number of Sequences: 59808
Number of extensions: 443738
Number of successful extensions: 1179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)