Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_I15
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 30 1.3
SB_12190| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4) 29 3.0
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37) 29 3.0
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13) 29 3.0
SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07) 29 4.0
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 28 5.3
SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27) 27 9.2
SB_23873| Best HMM Match : V-ATPase_C (HMM E-Value=6.6) 27 9.2
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 105 YLVPSSFCSYVPY-AVCVSASSFHTGRDERVCVLAQTSLLSLACRR 239
+L PS C +P A+C + + DER C A SL +L CRR
Sbjct: 224 FLCPSGEC--IPTTALCNNENDCSDNADERNCQYANCSLNNLGCRR 267
>SB_12190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 58 TVTSLLGGRTYFRFLGTSYLLHSVLTFL 141
T T LL + +F+GT YLLH VL L
Sbjct: 385 TATGLLKQTSKLKFIGTVYLLHEVLPIL 412
>SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1111
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 58 TVTSLLGGRTYFRFLGTSYLLHSVLTFL 141
T T LL + +F+GT YLLH VL L
Sbjct: 727 TATGLLKQTSKLKFIGTVYLLHEVLPIL 754
>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
Length = 166
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 201 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 109
+H LA H +++RP+ R+ K R++K+R
Sbjct: 79 RHGLASHDKKKRERPSLVARERMKKRLRKIR 109
>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
Length = 1376
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 228 LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 112
LDL KHR RH EKK K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037
>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
Length = 417
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 201 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 109
+H LA H +++RP+ R+ K R++K+R
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIR 408
>SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)
Length = 659
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 465 FLIIFEISA*TSCRIRHEAETQPVCTCICA 554
+ ++ E+S S +RHEA VC C+CA
Sbjct: 107 YCVLLELSG--SAPLRHEALITAVCLCLCA 134
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 278 VLKPNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICLRANNLLVI 427
V+ NT ++ +T +F I +++T C++S TI + NN + I
Sbjct: 137 VIINNTIISTKITTSTTTTFIIIIIIITTSSHHCRSSTTIVVTTNNTITI 186
>SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 200 NTDSLVTACMKRRGRHANSVRNVRTE*RRYEVPRNLK 90
N +++ R RH ++R ++ R Y++PRNL+
Sbjct: 370 NMTAIIQRLYSRTSRHRRNLRIIQDFVRFYKIPRNLR 406
>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 204 PKHRLARHGLYEKKRPTRKQRKERKNRMKK 115
P+ L H L ++ R R+QR ER++R+K+
Sbjct: 21 PQQILFTHRLEQRYRVERRQRLERRHRVKR 50
>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
Length = 1068
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +1
Query: 370 SWMQDIAYHLLARQQSVGHKFTRTNRRCSFTHF*LFSR-FRRKP-RAEFGTRLKHSQSVP 543
+W +D+ L+++Q+SVG ++ + S+T + R + P A FG + H Q V
Sbjct: 452 TWKEDMRAILISKQKSVG-EWCKATMEASYTMNITYHRAIKCSPYEAVFGFKAHHGQEVQ 510
Query: 544 VSVLQN 561
L++
Sbjct: 511 EEQLED 516
>SB_23873| Best HMM Match : V-ATPase_C (HMM E-Value=6.6)
Length = 369
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +2
Query: 272 KFVLKPNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICLRANNLLVINLRVRIVA 451
+ L P+T + G TLY+ V L G+ H+I +ANN +V N+ +V
Sbjct: 27 RVTLNPST-ASPGETLYVAVPKLSEGVTLVPGYLRVGFDHSISGQANNTVVNNVGRNLVG 85
Query: 452 VPSLIF 469
+ F
Sbjct: 86 RLKITF 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,243,589
Number of Sequences: 59808
Number of extensions: 380710
Number of successful extensions: 1102
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -