Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I15
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal pro...   175   3e-44
Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical pr...    42   3e-04
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    40   0.001
AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical ...    28   4.6  
AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z68751-5|CAA92975.1|  468|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 24 protein.
          Length = 131

 Score =  175 bits (425), Expect = 3e-44
 Identities = 81/116 (69%), Positives = 96/116 (82%), Gaps = 1/116 (0%)
 Frame = -3

Query: 447 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 268
           TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V  FGF++  G
Sbjct: 6   TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65

Query: 267 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 103
           GGKS GFAL+YDT+D AKKFEPK+RL R GL  K ++P RKQRKERKNR KKVRGT
Sbjct: 66  GGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKVRGT 121


>Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical
           protein T26G10.3 protein.
          Length = 91

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = -3

Query: 396 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 298
           MV +V+ PG+PT  K +IREK+A  Y + PD +
Sbjct: 1   MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -3

Query: 252 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 124
           GF L+YDT D A K++P+H  + H      R +  +RKE++ R
Sbjct: 54  GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95


>AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical
           protein C45H4.14b protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 240 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 115
           I   LD  KK E KHR A+     +K+  ++Q K+ K  +KK
Sbjct: 17  ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 57


>AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical
           protein C45H4.14a protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 240 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 115
           I   LD  KK E KHR A+     +K+  ++Q K+ K  +KK
Sbjct: 64  ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 104


>Z68751-5|CAA92975.1|  468|Caenorhabditis elegans Hypothetical
           protein T05E11.5 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 65  HHFLAAAPTLDFLVPRTFFILFL 133
           HHF AA P L +LVP   F+  L
Sbjct: 410 HHFKAAQPALLYLVPCCLFVPLL 432


>AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical
           protein Y51A2A.6 protein.
          Length = 140

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = -3

Query: 285 FKTNFGGGKSTGFALI----YDTLDLAKKFEPKHRLARHGLYEKKRPTRKQR 142
           F  N GGGK+ GF+        + +  KK    H    HG   + RPTR  R
Sbjct: 21  FVKNNGGGKNHGFSSASSSSSSSSEEGKKHGHGHHHHNHGRPSRPRPTRPPR 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,417,417
Number of Sequences: 27780
Number of extensions: 282797
Number of successful extensions: 929
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)