Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_I13
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.72
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 1.3
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 27 1.7
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 27 2.9
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 5.1
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 5.1
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 26 5.1
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.1
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 6.7
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.7
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 8.8
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 8.8
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.72
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 60 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 167
++ L+ A L + YQ S +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 396 LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 506
LSI+ AK TI + + + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 125 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 274
P F ++D L +YR+K +D HD K+ ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163
>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 536 LMTSYYFPFAQRPDNYNLHSVXNYEAIR 619
L+ SYY PF DN ++ V YEA +
Sbjct: 20 LLNSYYGPFYDDGDNTGVNVVDLYEAFK 47
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 137 VNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTY 307
+NMD LL Y TK D + +NY ++ Y + N ++F+ +++RL +
Sbjct: 289 MNMDILLDSYLTKAMDIHATFIQKLNYDLI--NLLYEPFHNIYSSFIKPIDDRRLEF 343
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 482 GSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 574
G P+ +Y P + YYP +Y P +P
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQP 137
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 146 DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYANYS 265
D + I R K G + HD +NY ++ E++ + N S
Sbjct: 83 DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -1
Query: 283 IVKESVGIVG-VIHI-LLFLFYNSIINSLCIVKN 188
+ KE I+ +++I ++FLF N +++ +C VKN
Sbjct: 22 VAKEKYKIIHRLLYISIIFLFLNYVVDIVCYVKN 55
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 235 FLFYNSIIN-SLCIVKNTVLHFSAINLK*SVHINEE 131
FLF N N SLC ++T F + S+HI E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 425 NFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHS 595
NFY + YF T G+ S+P F + YP S Y P P ++ S
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYFG-LNNAPGNIYPF--SMYKPLEADPQYLSVPS 179
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 8.8
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +2
Query: 356 HLPFWWSSERYGNLKHRRGEI-YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSP 514
H FWWS + NL E+ NF L FE N + EFS SP
Sbjct: 118 HQKFWWSLRKKRNLPKENSELDLSNFQDDLD----FE---NSISQKNEFSQKSP 164
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -1
Query: 574 RPLSEWEIV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 446
RP + ++V SH+ I+++L + RVP YG KT ++ C
Sbjct: 30 RPANLEDVV-SHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,056
Number of Sequences: 5004
Number of extensions: 53286
Number of successful extensions: 162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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