Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I11
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    28   0.66 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   1.5  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   2.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   2.7  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    26   2.7  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   3.5  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   6.1  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   6.1  

>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -2

Query: 257 LARSGMR*IWYSNCTSESAGCGSFFIYFDKCLLEGFRHYYTVT 129
           L R  MR I   N  S++A C   +  FD   LEG   Y  V+
Sbjct: 597 LVRMPMRTISEGNLDSDAAKCRIMYTKFDSICLEGIVGYQRVS 639


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 405 LIKKNVYDCFKINDSVSKVL 346
           L+  ++YDC+K N+SV  VL
Sbjct: 59  LLFTHIYDCYKTNESVWNVL 78


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -2

Query: 350 SYINGYKYQQKLFYLI*NEISERMINFENQRLARSGMR*IW 228
           +++NGY Y+  +   +  ++S R+  F N+ +       IW
Sbjct: 167 AWLNGYSYKASVSNALLFQLSSRLARFTNESVYSDWANKIW 207


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 30   PKFEIKSKLDLKPLMPKFGVSKIFNEPAPNIV 125
            P+F  K+ LD    + +FG SK+ + P+  ++
Sbjct: 2200 PRFVFKNHLDCTVSLREFGSSKVLHLPSNELI 2231


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = -2

Query: 395 KMYMIVLKLMILSVKSYINGYKYQQKLFYLI*NEISERMINFENQRL 255
           K + +   ++  S K ++N + Y       +   + + ++ FENQR+
Sbjct: 5   KTHFLSYNILRYSTKRWMNRHSYSHHAKCTVAQLLKQNLLTFENQRI 51


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -2

Query: 311 YLI*NEISERMINFENQRLARSGMR*IWYSNCTSESAGCGSFFIYFDKCLLEGFRHYYTV 132
           Y I + ++  +++FE   L + G   + Y NC S+    GS F ++ K       HY + 
Sbjct: 546 YRIPSGLNFEIVSFEP--LKQDGFATL-YLNCNSKPMSLGSMFEHYRKLARRLISHYLSK 602

Query: 131 T 129
           T
Sbjct: 603 T 603


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 185 FIYFDKCLLEGFRHYYTV 132
           F +  KCL E FR++Y +
Sbjct: 102 FTFLPKCLYEQFRYFYNM 119


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 30  PKFEIKSKLDLKPLMPKFGVSKIFNEPAPN 119
           PKF + S +D   + P+   SKI N  +P+
Sbjct: 230 PKFSVDSSVDDNAITPRKPFSKIPNRLSPS 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,659
Number of Sequences: 5004
Number of extensions: 32173
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)