Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_I11
(414 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0044 - 25150322-25151260 43 8e-05
01_01_1152 + 9170628-9171899 43 1e-04
11_02_0012 - 7346282-7347136,7347234-7347593 36 0.010
11_02_0011 - 7337618-7338496,7338596-7338991 36 0.017
01_06_0824 - 32243495-32244319,32244449-32244859 35 0.022
11_01_0750 - 6315126-6315896,6316371-6316784 32 0.21
11_01_0771 + 6453130-6454488 31 0.36
04_01_0625 - 8222105-8222462,8222574-8222926,8223029-8223204,822... 27 4.5
03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467 27 5.9
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 27 7.8
01_01_0922 + 7278912-7279274,7281449-7281572,7282489-7282604,728... 27 7.8
>05_06_0044 - 25150322-25151260
Length = 312
Score = 43.2 bits (97), Expect = 8e-05
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Frame = +3
Query: 18 KLEMPKFEIKSKLDLKPLMPKFGVSKIFNEPAPNIVKG------DSVVVSEAFQEAFIKV 179
+L++PKFE+ K++ L+ +FG+ F A N G VS + F+ V
Sbjct: 195 ELKIPKFEVSLKVEASRLLREFGLDLPFLPAADNSFSGMLLDPPQGTAVSSLLHQCFVNV 254
Query: 180 DEEXXXXXXXXXXXXXPYSSHSRPRQPLV-FKVDHPFAYFILYKI 311
+EE + + P +V F DHPF +FI+ ++
Sbjct: 255 NEEGTVAAAGTVGEIMGF---AMPDDQIVDFVADHPFLFFIVEEV 296
>01_01_1152 + 9170628-9171899
Length = 423
Score = 42.7 bits (96), Expect = 1e-04
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = +3
Query: 18 KLEMPKFEIKSKLDLKPLMPKFGVSKIF--NEPAPNIVKGDSVVVSEAFQEAFIKVDEEX 191
+L +PKF+ K + K M K GV++ F + + + GD + ++E + +A I+VDE
Sbjct: 311 RLMVPKFKFSFKFEAKSDMRKLGVTRAFAGGDFSGMVTGGDGLFIAEVYHQATIEVDELG 370
Query: 192 XXXXXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFILYKIK*FLLVL 332
S S P P+ F D PF + ++ ++ +L L
Sbjct: 371 TVAAASTAVVMMQKGS-SLP--PVDFVADRPFLFAVVEELTGAVLFL 414
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 36.3 bits (80), Expect = 0.010
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Frame = +3
Query: 21 LEMPKFEIKSKLDLKPLMPKFGVSKIFNEPAPNI---VKGDSVVVSEAFQEAFIKVDEEX 191
L +P+F++ ++ ++ G+ F+ ++ + G+ VVV + A ++V+EE
Sbjct: 290 LRVPRFKVSFYSEMNEVLKGMGIGAAFDVGKVDLSGMIDGELVVVEKVMHRAVVEVNEEG 349
Query: 192 XXXXXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFIL 302
P+ F DHPFA+F++
Sbjct: 350 TEAAAATACTMKFLCLTLT--SPVDFVADHPFAFFVV 384
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 35.5 bits (78), Expect = 0.017
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Frame = +3
Query: 21 LEMPKFEIKSKLDLKPLMPKFGVSKIFNEPAPNIV--------KGDSVVVSEAFQEAFIK 176
L +P+F++ + ++ GV+ F+ ++ +G +VV E F A ++
Sbjct: 306 LRVPRFKVSFYSQINGVLQGMGVTAAFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVVE 365
Query: 177 VDEEXXXXXXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFIL 302
V+EE S S P F DHPFA+F++
Sbjct: 366 VNEEGTEAAASTACTIRLLSM-SYPED---FVADHPFAFFVV 403
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 35.1 bits (77), Expect = 0.022
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Frame = +3
Query: 27 MPKFEIKSKLDLKPLMPKFGVSKIFNEPAPNIVK-------GDSVVVSEAFQEAFIKVDE 185
+P+F + K + + + G+ F P ++ + + +VVS + E+F++V+E
Sbjct: 292 VPRFTLSYKTNAAETLRQLGLRLPFEYPGADLSEMVESSPEAEKIVVSAVYHESFVEVNE 351
Query: 186 E-XXXXXXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFI 299
E ++ S P + F DHPF + I
Sbjct: 352 EGTEAAAATAVVMTLGCAAPSAPVHVVDFVADHPFMFLI 390
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 31.9 bits (69), Expect = 0.21
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Frame = +3
Query: 15 VKLEMPKFEIKSKLDLKPLMPKFGVSKIFNEPA--PNIVKGDS----VVVSEAFQEAFIK 176
V + +P F+I ++D+K + G+ F A +++K D + +S+ +A ++
Sbjct: 280 VGISVPNFKISFQIDVKDFLKDMGLELPFLREAEFSDMIKEDDSSGPLFLSDVLHKAVLE 339
Query: 177 VDEEXXXXXXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFI 299
VD++ P P Q FK DHPF + I
Sbjct: 340 VDQKGIEETSVSMGLGKPL-----PAQH--FKADHPFFFMI 373
>11_01_0771 + 6453130-6454488
Length = 452
Score = 31.1 bits (67), Expect = 0.36
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 129 GDSVVVSEAFQEAFIKVDEEXXXXXXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFIL 302
G + V + +A I+V+EE P P P+ F +HPFAYFI+
Sbjct: 379 GWPLFVGDIQHKAVIEVNEEGTVAAAATMTRMLPSGV---PPPPVDFVAEHPFAYFIV 433
>04_01_0625 -
8222105-8222462,8222574-8222926,8223029-8223204,
8223318-8223555,8226983-8227423
Length = 521
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 344 YKTLLTESLILKQSYTFFFINDG 412
YK L S++LK+S TF F N+G
Sbjct: 329 YKRLEEGSIVLKKSKTFSFCNEG 351
>03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467
Length = 640
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 6 NRKVKLEMPKFEIKSKLDLKPLMPKFGVSKIFNE 107
N+ +KLE P ++ + DL+ + K G SK FN+
Sbjct: 501 NQSLKLEYPHLDMCLRGDLEENLTKTGRSKRFNQ 534
>05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 26.6 bits (56), Expect = 7.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 173 DKCLLEGFRHYYTVTLDDVWCRLVE 99
++C L+ FRH Y + + W + V+
Sbjct: 1406 NRCHLQAFRHLYVIATEPRWIQTVD 1430
>01_01_0922 +
7278912-7279274,7281449-7281572,7282489-7282604,
7282683-7282748,7283379-7283413,7283559-7283601,
7284325-7284362,7284448-7284555,7287195-7287252,
7287862-7288003,7288215-7288426,7288544-7288778,
7288874-7288941,7290329-7290602,7291137-7291249,
7291330-7291390,7292170-7292237,7292585-7292622,
7292699-7292888
Length = 783
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 15 VKLEMPKFEIKSKLDLKPLMPKFGVSK-IFNEP 110
+K++ + ++ K+D+K P FG+ K IF +P
Sbjct: 607 IKMQAHEESVRVKMDIKGSQPDFGIDKSIFIKP 639
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,977,043
Number of Sequences: 37544
Number of extensions: 179978
Number of successful extensions: 439
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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