Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I11
         (414 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      50   1e-06
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      46   1e-05
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      41   5e-04
SB_51995| Best HMM Match : Histone (HMM E-Value=3.7e-15)               29   1.1  
SB_5029| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.5  
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_45255| Best HMM Match : Ribosomal_L36 (HMM E-Value=4.2)             27   8.1  
SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)                27   8.1  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
 Frame = +3

Query: 15  VKLEMPKFEIKSKLDLKPLMPKFGVSKIFNEPAPNI----VKGDSVVVSEAFQEAFIKVD 182
           V++ +PKF++ S+  L   + + G+ K+F++ A +     +  + + VS    +AF++V+
Sbjct: 230 VEVYIPKFKMTSEFKLNEALQELGMKKMFDQAAADFTGISLPPEHLFVSAVLHKAFVEVN 289

Query: 183 EEXXXXXXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFI 299
           EE                +  R  +PLVF+ DHPF + I
Sbjct: 290 EEGTEAAAATAAIMMMRCAIMR--EPLVFRADHPFLFLI 326


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
 Frame = +3

Query: 6   NRKVKLEMPKFEIKSKLDLKPLMPKFGVSKIFNE---PAPNIVKGDSVVVSEAFQEAFIK 176
           N  V++ +PKF +  KL+L+ L+   GVS IF+        I     + VS A  +A I+
Sbjct: 231 NTTVEVSIPKFRLSQKLELRSLLQDLGVSDIFDSRKADLSGISAAKGLYVSSAIHKAHIE 290

Query: 177 VDEEXXXXXXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFILYK 308
           V+E                S         VF  DHPF + I +K
Sbjct: 291 VNERGTVAAATTGVVMAKRSLDMNE----VFYADHPFLFSIHHK 330


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
 Frame = +3

Query: 12  KVKLEMPKFEIKSKLDLKPLMPKFGVSKIFNEPAPNI--VKGDSVVVSEAFQEAFIKVDE 185
           +V++ +PKF +  +  L   +   G S +F+    ++  +    +VVSE   +AF++V+E
Sbjct: 266 EVEVTLPKFTLTQEFSLGETLKGMGASDLFSPGKADLSGISAAPLVVSEVVHKAFVEVNE 325

Query: 186 EXXXXXXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFI 299
           E               S    P    VF  +HPF + I
Sbjct: 326 EGTIAAAATGVGIMLMSMPMNP----VFYANHPFLFLI 359


>SB_51995| Best HMM Match : Histone (HMM E-Value=3.7e-15)
          Length = 138

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 110 RLVEYFRNSKLGHQRFKVQFAFYFK 36
           RL  Y + S+   +RF++QFA+Y++
Sbjct: 76  RLAHYNKKSQSARERFRLQFAYYYQ 100


>SB_5029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -2

Query: 209 ESAGC---GSFFIYFDKCLLEGFRHYYTVTLDDVWCRLV-EYF 93
           E  GC   G   IY  K + +GF +  +   + +W ++V EYF
Sbjct: 2   EKTGCRYAGGISIYISKAIADGFTYMPSKNNNIIWLKIVKEYF 44


>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1273

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 54  LDLKPLMPKFGVSKIFNEPAPNIVKGDSVVVSEAFQEAF 170
           +D KP +  F  +  F+E  P++ + +S  V+E F++AF
Sbjct: 636 VDSKPRVA-FDENVTFDERKPSVTQSESSAVTEDFEDAF 673


>SB_45255| Best HMM Match : Ribosomal_L36 (HMM E-Value=4.2)
          Length = 150

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 87  VSKIFNEPAPNIVKGDSVVVSEAFQEAFIKVDEE 188
           + K FN    ++     VV+ +AF E F   DEE
Sbjct: 112 IKKSFNAALKHVKPDAVVVLGDAFNEGFTATDEE 145


>SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)
          Length = 616

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 113 CRLVEYFR--NSKLGHQRFKVQFAFYFKFWHLQLHF 12
           CRL+   R  N  +   +FK++ A + K WH  + F
Sbjct: 563 CRLILDLRHVNKCIAKTKFKMEDAHFMKLWHHLIQF 598


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,600,554
Number of Sequences: 59808
Number of extensions: 210306
Number of successful extensions: 384
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)