Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I11
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14540.1 68415.m01628 serpin family protein / serine protease...    32   0.13 
At2g25240.1 68415.m03020 serpin, putative / serine protease inhi...    29   0.94 
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    29   1.2  
At4g19920.1 68417.m02918 disease resistance protein (TIR class),...    28   2.2  
At4g10660.1 68417.m01741 hypothetical protein                          27   5.0  

>At2g14540.1 68415.m01628 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 407

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +3

Query: 72  MPKFGVSKIFNEPAPNIVKGDSVVVSEAFQEAFIKVDEEXXXXXXXXXXXXXPYSSHSRP 251
           +PKF +   F   A ++     + VS   Q+A I++DEE               S    P
Sbjct: 308 IPKFKIE--FGFEASSVFNDFELNVS-LHQKALIEIDEEGTEAAAATTVVVVTGSCLWEP 364

Query: 252 RQPLVFKVDHPFAYFI 299
           ++ + F  DHPF + I
Sbjct: 365 KKKIDFVADHPFLFLI 380


>At2g25240.1 68415.m03020 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 324

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
 Frame = +3

Query: 27  MPKFEIKSKLDLKPLMPKFGVSKIFN------EPAPNIVKGDSVVVSEAFQEAFIKVDEE 188
           +PKF+   + +   ++   G++  FN      E   +   GD + VS    +A I+VDEE
Sbjct: 212 IPKFKFSFEFNASEVLKDMGLTSPFNNGGGLTEMVDSPSNGDDLYVSSILHKACIEVDEE 271

Query: 189 XXXXXXXXXXXXXPYSSHSRPRQPLVFKVDHPFAYFI 299
                          S    P     F  D PF + +
Sbjct: 272 GTEAAAVSVGVVSCTSFRRNPD----FVADRPFLFTV 304


>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = +3

Query: 66  PLMPKFGVSKIFNEPAPNIVKGDSVVVSEAFQEAFIKVDEEXXXXXXXXXXXXXPYSSHS 245
           P   K  ++++ + P+     GD + VS    +A I+VDEE             P     
Sbjct: 300 PFTSKGNLTEMVDSPS----NGDKLHVSSIIHKACIEVDEEGTEAAAVSVAIMMPQCLMR 355

Query: 246 RPRQPLVFKVDHPFAYFI 299
            P     F  DHPF + +
Sbjct: 356 NPD----FVADHPFLFTV 369


>At4g19920.1 68417.m02918 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -2

Query: 299 NEISERMINFENQRLARSGMR*IWYSNCTSESAGCGSFFIYFDKCLLEG----FRHYYTV 132
           NE+  R +    +R+  S M  + +S+  SES  C +  +  D C+ EG       +Y V
Sbjct: 85  NEMKGRDLQNLFKRIENSKMALVIFSDRFSESDWCLNELVKIDDCVKEGKLTVIPVFYRV 144

Query: 131 TLDDV 117
             DDV
Sbjct: 145 NTDDV 149


>At4g10660.1 68417.m01741 hypothetical protein
          Length = 317

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/44 (31%), Positives = 29/44 (65%)
 Frame = -3

Query: 175 LINASWKASDTTTLSPLTMFGAGSLNIFETPNLGIKGLRSNLLF 44
           L++++W+  ++TTL  +T+F   S+   ET  L + G+R+++ F
Sbjct: 228 LVSSNWEEINSTTLDGVTIF--ASMYSSET-RLDVLGMRNSVYF 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,397,572
Number of Sequences: 28952
Number of extensions: 156887
Number of successful extensions: 405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)