Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I10
         (152 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    48   2e-07
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    24   2.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    23   5.5  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    22   9.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    22   9.5  

>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 48.0 bits (109), Expect = 2e-07
 Identities = 20/32 (62%), Positives = 27/32 (84%)
 Frame = +2

Query: 53  MSILAYNGGAVVAMKGQDCVAIATDKRFGIQA 148
           MSI+ YNGG+ VAM G++CVAIA+D R G+Q+
Sbjct: 1   MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQS 32


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 98  PSSQQLHLHCTLVSTFYS 45
           PSSQ L   CT +ST+ S
Sbjct: 241 PSSQLLQAQCTALSTYIS 258


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 126 SVAIATQSWPFIATTAPPLYASI 58
           +V  A   +PF+++T  PLY S+
Sbjct: 500 AVERAACPYPFLSSTLQPLYVSL 522


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 123 VAIATQSWPFIATTAPPLYASID 55
           VA A  +WP I  ++   Y S+D
Sbjct: 285 VASAIAAWPEIVNSSYDAYVSVD 307


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 107 SLGPSSQQLHLHCTLVSTF--YSLD*IF 30
           S+G S   LHLH  +V T   +SL+ I+
Sbjct: 268 SIGDSQLFLHLHSRIVQTLCCFSLNFIY 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,318
Number of Sequences: 5004
Number of extensions: 8338
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)