Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I10
         (152 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174...    48   8e-07
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460...    46   6e-06
09_03_0065 + 12013715-12013720,12013899-12014612                       27   1.6  
06_03_0023 + 15558890-15559117,15559229-15560134                       27   2.7  
03_01_0521 + 3916876-3916987,3917062-3917438                           25   6.3  
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465...    25   6.3  
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858...    25   8.3  
02_05_0934 - 32851709-32853398,32854458-32854738                       25   8.3  

>06_03_0903 -
           25816395-25816493,25816695-25816779,25817390-25817479,
           25818566-25818673,25818771-25818952,25819032-25819216,
           25820812-25820971
          Length = 302

 Score = 48.4 bits (110), Expect = 8e-07
 Identities = 21/33 (63%), Positives = 26/33 (78%)
 Frame = +2

Query: 53  MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQ 151
           MSI  YNG AVVAM G++C AIA+D+R G+Q Q
Sbjct: 114 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQ 146


>02_01_0614 -
           4599035-4599083,4599209-4599303,4599410-4599494,
           4600107-4600196,4600772-4600879,4600983-4601197
          Length = 213

 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +2

Query: 53  MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQ 151
           + I  YNG AVVAM G++C AIA+D+R G+Q Q
Sbjct: 10  LQIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQ 42


>09_03_0065 + 12013715-12013720,12013899-12014612
          Length = 239

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 61  TSVQWRCSCCDEGPRLCGYRYG 126
           +S +WRC CC E      YR G
Sbjct: 114 SSARWRCDCCGERSDYWVYRSG 135


>06_03_0023 + 15558890-15559117,15559229-15560134
          Length = 377

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 117 IATQSWPFIATTAPPLYASID 55
           ++T +WPF+A  A  L  S+D
Sbjct: 4   LSTAAWPFLAAVAAALLCSVD 24


>03_01_0521 + 3916876-3916987,3917062-3917438
          Length = 162

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 70  QWRCSCCDEGPRLCGYRYGQTLWYPGP 150
           +WRCS   E   L G R G  +  P P
Sbjct: 84  KWRCSATAEAETLSGARGGAQIRVPRP 110


>02_01_0622 -
           4658133-4658150,4658269-4658337,4658436-4658462,
           4658808-4658873,4658954-4659076,4659562-4659629,
           4659703-4659766,4659994-4660135,4660218-4660306,
           4660574-4660637,4660870-4661021,4661124-4661261,
           4661742-4661867,4661971-4662183,4662343-4662426,
           4662583-4662742,4662993-4663126,4664047-4664136,
           4664313-4664471,4665528-4665611,4666170-4666289,
           4666338-4666391,4666899-4666945,4667556-4667598,
           4667730-4668586,4668845-4668899
          Length = 1081

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 27  SEYLIKTIKCRY*RTMEV--QLLR*RAKTVWL 116
           ++Y+I  +KCR+ R   +  QLL    +T W+
Sbjct: 384 NKYVINAVKCRFIRVERIRDQLLECNKETYWV 415


>07_03_0583 -
           19684388-19684498,19685083-19685216,19685765-19685888,
           19685982-19686251,19686961-19687155,19687236-19687328,
           19687411-19687539,19687646-19689277
          Length = 895

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 82  SCCDEGPRLCGYRYGQTLWYP 144
           S CD     CG+R  + LWYP
Sbjct: 788 SVCDFRNGGCGHRITRYLWYP 808


>02_05_0934 - 32851709-32853398,32854458-32854738
          Length = 656

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 61  TSVQWRCSCCDEGPRLCGYRY 123
           T+  W C  CD     C YRY
Sbjct: 533 TNGNWTCDKCDREFEECDYRY 553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,199,775
Number of Sequences: 37544
Number of extensions: 54094
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)