Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I10
         (152 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   54   1e-08
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)         31   0.19 
SB_6241| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.7  

>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 23/39 (58%), Positives = 31/39 (79%)
 Frame = +2

Query: 35  FNQDYKMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQ 151
           F ++  MSI+ YNG A++AM G++CVAIA D+R GIQAQ
Sbjct: 65  FRKEAVMSIMEYNGAAIIAMVGKNCVAIAADRRLGIQAQ 103


>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 65  AYNGGAVVAMKGQDCVAIATDKR 133
           A+NGG V+A+ G+D   IA+D R
Sbjct: 84  AFNGGTVLAISGEDFAVIASDTR 106


>SB_6241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 18  TSYSEYLIKTIKCRY*RTMEVQLLR*RAKTVW 113
           T + E+L K I C   RT E+     + KT W
Sbjct: 297 TPHEEHLEKPISCLQSRTTELHSCMKQLKTAW 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,913,919
Number of Sequences: 59808
Number of extensions: 73523
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 16,821,457
effective HSP length: 30
effective length of database: 15,027,217
effective search space used: 300544340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)