Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I10
         (152 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D26598-1|BAA05645.1|  205|Homo sapiens proteasome subunit HsC10-...    60   1e-09
BC013008-1|AAH13008.1|  205|Homo sapiens proteasome (prosome, ma...    60   1e-09
BC002570-1|AAH02570.1|  205|Homo sapiens proteasome (prosome, ma...    60   1e-09
DQ120692-1|ABB92464.1|  204|Homo sapiens rcPSMB3 protein.              53   1e-07
D00761-1|BAA00658.1|  241|Homo sapiens proteasome subunit C5 pro...    28   4.8  
BT019720-1|AAV38525.1|  241|Homo sapiens proteasome (prosome, ma...    28   4.8  
BC020807-1|AAH20807.1|  241|Homo sapiens proteasome (prosome, ma...    28   4.8  
BC000508-1|AAH00508.1|  241|Homo sapiens proteasome (prosome, ma...    28   4.8  
AL031259-8|CAA20287.1|  241|Homo sapiens proteasome (prosome, ma...    28   4.8  
AL008628-2|CAI19555.1|  241|Homo sapiens proteasome (prosome, ma...    28   4.8  
AK223193-1|BAD96913.1|  241|Homo sapiens proteasome beta 1 subun...    28   4.8  
AB209078-1|BAD92315.1|  196|Homo sapiens proteasome beta 1 subun...    28   4.8  

>D26598-1|BAA05645.1|  205|Homo sapiens proteasome subunit HsC10-II
           protein.
          Length = 205

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 26/33 (78%), Positives = 32/33 (96%)
 Frame = +2

Query: 53  MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQ 151
           MSI++YNGGAV+AMKG++CVAIA D+RFGIQAQ
Sbjct: 1   MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQ 33


>BC013008-1|AAH13008.1|  205|Homo sapiens proteasome (prosome,
           macropain) subunit, beta type, 3 protein.
          Length = 205

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 26/33 (78%), Positives = 32/33 (96%)
 Frame = +2

Query: 53  MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQ 151
           MSI++YNGGAV+AMKG++CVAIA D+RFGIQAQ
Sbjct: 1   MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQ 33


>BC002570-1|AAH02570.1|  205|Homo sapiens proteasome (prosome,
           macropain) subunit, beta type, 3 protein.
          Length = 205

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 26/33 (78%), Positives = 32/33 (96%)
 Frame = +2

Query: 53  MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQ 151
           MSI++YNGGAV+AMKG++CVAIA D+RFGIQAQ
Sbjct: 1   MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQ 33


>DQ120692-1|ABB92464.1|  204|Homo sapiens rcPSMB3 protein.
          Length = 204

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 23/33 (69%), Positives = 30/33 (90%)
 Frame = +2

Query: 53  MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQ 151
           MSI++YNGGA++AMKG++ VAIA D+ FGIQAQ
Sbjct: 1   MSIMSYNGGAIMAMKGKNRVAIAADRHFGIQAQ 33


>D00761-1|BAA00658.1|  241|Homo sapiens proteasome subunit C5
           protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 50  KMSILAYNGGAVVAMKGQDCVAIATDKR 133
           + S   +NGG ++A+ G+D   +A+D R
Sbjct: 29  RFSPYVFNGGTILAIAGEDFAIVASDTR 56


>BT019720-1|AAV38525.1|  241|Homo sapiens proteasome (prosome,
           macropain) subunit, beta type, 1 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 50  KMSILAYNGGAVVAMKGQDCVAIATDKR 133
           + S   +NGG ++A+ G+D   +A+D R
Sbjct: 29  RFSPYVFNGGTILAIAGEDFAIVASDTR 56


>BC020807-1|AAH20807.1|  241|Homo sapiens proteasome (prosome,
           macropain) subunit, beta type, 1 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 50  KMSILAYNGGAVVAMKGQDCVAIATDKR 133
           + S   +NGG ++A+ G+D   +A+D R
Sbjct: 29  RFSPYVFNGGTILAIAGEDFAIVASDTR 56


>BC000508-1|AAH00508.1|  241|Homo sapiens proteasome (prosome,
           macropain) subunit, beta type, 1 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 50  KMSILAYNGGAVVAMKGQDCVAIATDKR 133
           + S   +NGG ++A+ G+D   +A+D R
Sbjct: 29  RFSPYVFNGGTILAIAGEDFAIVASDTR 56


>AL031259-8|CAA20287.1|  241|Homo sapiens proteasome (prosome,
           macropain) subunit, beta type, 1 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 50  KMSILAYNGGAVVAMKGQDCVAIATDKR 133
           + S   +NGG ++A+ G+D   +A+D R
Sbjct: 29  RFSPYVFNGGTILAIAGEDFAIVASDTR 56


>AL008628-2|CAI19555.1|  241|Homo sapiens proteasome (prosome,
           macropain) subunit, beta type, 1 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 50  KMSILAYNGGAVVAMKGQDCVAIATDKR 133
           + S   +NGG ++A+ G+D   +A+D R
Sbjct: 29  RFSPYVFNGGTILAIAGEDFAIVASDTR 56


>AK223193-1|BAD96913.1|  241|Homo sapiens proteasome beta 1 subunit
           variant protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 50  KMSILAYNGGAVVAMKGQDCVAIATDKR 133
           + S   +NGG ++A+ G+D   +A+D R
Sbjct: 29  RFSPYVFNGGTILAIAGEDFAIVASDTR 56


>AB209078-1|BAD92315.1|  196|Homo sapiens proteasome beta 1 subunit
           variant protein.
          Length = 196

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 50  KMSILAYNGGAVVAMKGQDCVAIATDKR 133
           + S   +NGG ++A+ G+D   +A+D R
Sbjct: 34  RFSPYVFNGGTILAIAGEDFAIVASDTR 61


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,129,384
Number of Sequences: 237096
Number of extensions: 325788
Number of successful extensions: 501
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 76,859,062
effective HSP length: 30
effective length of database: 69,746,182
effective search space used: 1394923640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)