Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_I10
         (152 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta...    44   2e-05
Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical p...    25   5.5  
Z99288-2|CAB16547.1|  353|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta
           subunit protein 3 protein.
          Length = 204

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = +2

Query: 53  MSILAYNGGAVVAMKGQDCVAIATDKRFGIQ 145
           MSI++Y GG VVAM G +CV IA+D R G Q
Sbjct: 1   MSIMSYTGGTVVAMAGDECVCIASDLRIGEQ 31


>Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical
           protein C36B1.4 protein.
          Length = 253

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 32  IFNQDYKMSILAYNGGAVVAMKGQDCVAIATDKR 133
           +F  +Y    +   G   V ++G+DC+ I  +K+
Sbjct: 17  LFQVEYAQEAVK-KGSTAVGVRGKDCIVIGVEKK 49


>U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical
           protein C37C3.3 protein.
          Length = 265

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 102 WPFIATTAPPLYASIDIL*S*LNIHCKMFFL 10
           +P I  +   L+ S +   S L IHC ++FL
Sbjct: 16  YPLIVVSTCALFTSYNFFLSVLRIHCFIYFL 46


>Z99288-2|CAB16547.1|  353|Caenorhabditis elegans Hypothetical
           protein ZK262.2 protein.
          Length = 353

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 88  CDEGPRLCGYRYGQTLWYPG 147
           CD G R  GY +   ++YPG
Sbjct: 247 CDPGSRNGGYHHAIEVFYPG 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,582,560
Number of Sequences: 27780
Number of extensions: 48661
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)